FastQCFastQC Report
Thu 17 Oct 2019
female_ovary.fq

Summary

[OK]Basic Statistics

MeasureValue
Filenamefemale_ovary.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences342844
Sequences flagged as poor quality0
Sequence length53-1200
%GC53

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTACTG345750.0459.785286
GACTACG350300.0457.16391
TACTGTG348500.0455.550938
GTACTGT349750.0455.130957
ACTGTGT350350.0452.743389
ACGTACT351450.0452.662235
CTACGTA353100.0452.209053
ACTACGT355150.0450.590272
TACGTAC387400.0410.6564
TACGTAT4150.0130.100834
ACGTATG2950.0127.320495
CGTATGT3450.0108.868256
TATGTGT5400.069.554718
CTATGTA3209.094947E-1266.022643
TACTGTT7850.059.8081938
TATGTAC4703.8744474E-1044.9515844
ACGTCTG6350.044.3616685
ACGTATT3751.4894613E-743.8194735
CGTATTG3801.6528429E-743.2428936
CTGTGTG207900.041.75541310-19
Produced by FastQC (version 0.11.4)