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${datarootdir}/locale localstatedir = ${prefix}/var mandir = ${datarootdir}/man mkdir_p = $(MKDIR_P) oldincludedir = /usr/include pdfdir = ${docdir} prefix = /data/home/pitagoras program_transform_name = s,x,x, psdir = ${docdir} sbindir = ${exec_prefix}/sbin sharedstatedir = ${prefix}/com srcdir = . sysconfdir = ${prefix}/etc target = x86_64-unknown-linux-gnu target_alias = target_cpu = x86_64 target_os = linux-gnu target_vendor = unknown top_build_prefix = ../ top_builddir = .. top_srcdir = .. # Copied from ../util so "gmap_setup -B src" works during "make check" CLEANFILES = fa_coords gmap_process # Include master.c and master.h, so they get included in distribution EXTRA_DIST = mpidebug.c mpidebug.h master.c master.h # -DUTILITYP=1 needed for iit_store, iit_dump, iit_get, gmapindex, and # get-genome so they can handle both small and large genomes at run # time #lib_LTLIBRARIES = libgmap-@LIBGMAP_API_VERSION@.la #lib_LTLIBRARIES = libgmap.la #include_HEADERS = fopen.h bool.h types.h separator.h comp.h \ # except.h assert.h mem.h \ # intlist.h list.h \ # doublelist.h \ # littleendian.h bigendian.h \ # interval.h uintlist.h uint8list.h \ # iitdef.h iit-read.h iit-write.h parserange.h \ # univinterval.h iit-read-univ.h \ # table.h tableuint.h uinttable.h uinttableuint.h \ # stopwatch.h semaphore.h access.h \ # chrom.h filestring.h \ # md5.h complement.h bzip2.h sequence.h \ # genomicpos.h \ # bitpack64-read.h bitpack64-readtwo.h \ # maxent_hr.h \ # popcount.h genome128_hr.h genome128_consec.h \ # compress.h \ # mode.h chrnum.h genome.h samflags.h \ # getline.h datadir.h LIBGMAP_LA_FILES = bool.h types.h separator.h comp.h \ except.c except.h assert.c assert.h mem.c mem.h \ intlist.c intlist.h list.c list.h \ doublelist.c doublelist.h \ littleendian.c littleendian.h bigendian.c bigendian.h \ interval.c interval.h uintlist.c uintlist.h uint8list.c uint8list.h \ iit-read.c iit-read.h iit-write.c iit-write.h parserange.c parserange.h \ univinterval.c univinterval.h iit-read-univ.c iit-read-univ.h \ stopwatch.c stopwatch.h semaphore.c semaphore.h access.c access.h \ table.c table.h tableuint.c tableuint.h uinttable.c uinttable.h uinttableuint.c uinttableuint.h\ chrom.c chrom.h filestring.c filestring.h \ md5.c md5.h complement.h bzip2.c bzip2.h fopen.c fopen.h sequence.c sequence.h \ genomicpos.c genomicpos.h \ bitpack64-read.c bitpack64-read.h bitpack64-readtwo.c bitpack64-readtwo.h \ maxent_hr.c maxent_hr.h \ popcount.c popcount.h genome128_hr.c genome128_hr.h genome128_consec.c genome128_consec.h \ compress.c compress.h \ mode.h chrnum.c chrnum.h genome.c genome.h \ getline.c getline.h datadir.c datadir.h libgmap_CC = $(PTHREAD_CC) libgmap_la_CFLAGS = $(AM_CFLAGS) $(PTHREAD_CFLAGS) $(POPCNT_CFLAGS) -fPIC -DTARGET=\"$(target)\" -DGMAPDB=\"$(GMAPDB)\" libgmap_la_LDFLAGS = $(AM_LDFLAGS) $(STATIC_LDFLAG) -version-info $(LIBGMAP_SO_VERSION) libgmap_la_LIBADD = $(PTHREAD_LIBS) $(ZLIB_LIBS) $(BZLIB_LIBS) dist_libgmap_la_SOURCES = $(LIBGMAP_LA_FILES) CPUID_FILES = bool.h cpuid.c cpuid.h cpuid_CC = $(CC) cpuid_CFLAGS = $(AM_CFLAGS) -DMAIN=1 cpuid_LDFLAGS = $(AM_LDFLAGS) cpuid_LDADD = dist_cpuid_SOURCES = $(CPUID_FILES) GMAP_SELECT_FILES = bool.h cpuid.c cpuid.h gmap_select.c gmap_CC = $(CC) gmap_CFLAGS = $(AM_CFLAGS) gmap_LDFLAGS = $(AM_LDFLAGS) gmap_LDADD = dist_gmap_SOURCES = $(GMAP_SELECT_FILES) GMAPL_SELECT_FILES = bool.h cpuid.c cpuid.h gmapl_select.c gmapl_CC = $(CC) gmapl_CFLAGS = $(AM_CFLAGS) gmapl_LDFLAGS = $(AM_LDFLAGS) gmapl_LDADD = dist_gmapl_SOURCES = $(GMAPL_SELECT_FILES) GSNAP_SELECT_FILES = bool.h cpuid.c cpuid.h gsnap_select.c gsnap_CC = $(CC) gsnap_CFLAGS = $(AM_CFLAGS) gsnap_LDFLAGS = $(AM_LDFLAGS) gsnap_LDADD = dist_gsnap_SOURCES = $(GSNAP_SELECT_FILES) GSNAPL_SELECT_FILES = bool.h cpuid.c cpuid.h gsnapl_select.c gsnapl_CC = $(CC) gsnapl_CFLAGS = $(AM_CFLAGS) gsnapl_LDFLAGS = $(AM_LDFLAGS) gsnapl_LDADD = dist_gsnapl_SOURCES = $(GSNAPL_SELECT_FILES) GMAP_FILES = bool.h types.h separator.h comp.h \ except.c except.h assert.c assert.h mem.c mem.h \ intlist.c intlist.h list.c list.h \ littleendian.c littleendian.h bigendian.c bigendian.h \ univinterval.c univinterval.h interval.c interval.h uintlist.c uintlist.h \ stopwatch.c stopwatch.h semaphore.c semaphore.h access.c access.h \ filestring.c filestring.h \ iit-read-univ.c iit-read-univ.h iitdef.h iit-read.c iit-read.h \ md5.c md5.h complement.h bzip2.c bzip2.h fopen.c fopen.h sequence.c sequence.h reader.c reader.h \ genomicpos.c genomicpos.h compress.c compress.h compress-write.c compress-write.h \ gbuffer.c gbuffer.h genome.c genome.h \ popcount.c popcount.h genome128_hr.c genome128_hr.h genome_sites.c genome_sites.h \ genome-write.c genome-write.h \ bitpack64-read.c bitpack64-read.h bitpack64-readtwo.c bitpack64-readtwo.h \ filesuffix.h indexdbdef.h indexdb.c indexdb.h \ epu16-bitpack64-read.c epu16-bitpack64-read.h epu16-bitpack64-readtwo.c epu16-bitpack64-readtwo.h \ oligo.c oligo.h block.c block.h \ chrom.c chrom.h segmentpos.c segmentpos.h \ chrnum.c chrnum.h uinttable.c uinttable.h gregion.c gregion.h \ matchdef.h match.c match.h matchpool.c matchpool.h \ diagnostic.c diagnostic.h stage1.c stage1.h \ diagdef.h diag.c diag.h diagpool.c diagpool.h \ cmet.c cmet.h atoi.c atoi.h \ orderstat.c orderstat.h oligoindex_hr.c oligoindex_hr.h \ transcript.c transcript.h \ scores.h intron.c intron.h maxent.c maxent.h maxent_hr.c maxent_hr.h samflags.h pairdef.h pair.c pair.h \ pairpool.c pairpool.h cellpool.c cellpool.h stage2.c stage2.h \ doublelist.c doublelist.h smooth.c smooth.h \ splicestringpool.c splicestringpool.h splicetrie_build.c splicetrie_build.h splicetrie.c splicetrie.h \ boyer-moore.c boyer-moore.h \ dynprog.c dynprog.h dynprog_simd.c dynprog_simd.h \ dynprog_single.c dynprog_single.h dynprog_genome.c dynprog_genome.h dynprog_cdna.c dynprog_cdna.h dynprog_end.c dynprog_end.h \ translation.c translation.h \ pbinom.c pbinom.h changepoint.c changepoint.h sense.h fastlog.h stage3.c stage3.h \ request.c request.h result.c result.h output.c output.h \ inbuffer.c inbuffer.h samheader.c samheader.h outbuffer.c outbuffer.h \ chimera.c chimera.h datadir.c datadir.h parserange.c parserange.h \ getline.c getline.h getopt.c getopt1.c getopt.h gmap.c # Note: dist_ commands get read by bootstrap, and don't follow the flags gmap_nosimd_CC = $(PTHREAD_CC) gmap_nosimd_CFLAGS = $(AM_CFLAGS) $(PTHREAD_CFLAGS) -DTARGET=\"$(target)\" -DGMAPDB=\"$(GMAPDB)\" $(POPCNT_CFLAGS) gmap_nosimd_LDFLAGS = $(AM_LDFLAGS) $(STATIC_LDFLAG) gmap_nosimd_LDADD = $(PTHREAD_LIBS) $(ZLIB_LIBS) $(BZLIB_LIBS) dist_gmap_nosimd_SOURCES = $(GMAP_FILES) gmap_sse2_CC = $(PTHREAD_CC) gmap_sse2_CFLAGS = $(AM_CFLAGS) $(PTHREAD_CFLAGS) -DTARGET=\"$(target)\" -DGMAPDB=\"$(GMAPDB)\" $(POPCNT_CFLAGS) -DHAVE_SSE2=1 $(SIMD_SSE2_CFLAGS) gmap_sse2_LDFLAGS = $(AM_LDFLAGS) $(STATIC_LDFLAG) gmap_sse2_LDADD = $(PTHREAD_LIBS) $(ZLIB_LIBS) $(BZLIB_LIBS) dist_gmap_sse2_SOURCES = $(GMAP_FILES) gmap_ssse3_CC = $(PTHREAD_CC) gmap_ssse3_CFLAGS = $(AM_CFLAGS) $(PTHREAD_CFLAGS) -DTARGET=\"$(target)\" -DGMAPDB=\"$(GMAPDB)\" $(POPCNT_CFLAGS) -DHAVE_SSE2=1 -DHAVE_SSSE3=1 $(SIMD_SSSE3_CFLAGS) gmap_ssse3_LDFLAGS = $(AM_LDFLAGS) $(STATIC_LDFLAG) gmap_ssse3_LDADD = $(PTHREAD_LIBS) $(ZLIB_LIBS) $(BZLIB_LIBS) dist_gmap_ssse3_SOURCES = $(GMAP_FILES) gmap_sse41_CC = $(PTHREAD_CC) gmap_sse41_CFLAGS = $(AM_CFLAGS) $(PTHREAD_CFLAGS) -DTARGET=\"$(target)\" -DGMAPDB=\"$(GMAPDB)\" $(POPCNT_CFLAGS) -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 $(SIMD_SSE4_1_CFLAGS) gmap_sse41_LDFLAGS = $(AM_LDFLAGS) $(STATIC_LDFLAG) gmap_sse41_LDADD = $(PTHREAD_LIBS) $(ZLIB_LIBS) $(BZLIB_LIBS) dist_gmap_sse41_SOURCES = $(GMAP_FILES) gmap_sse42_CC = $(PTHREAD_CC) gmap_sse42_CFLAGS = $(AM_CFLAGS) $(PTHREAD_CFLAGS) -DTARGET=\"$(target)\" -DGMAPDB=\"$(GMAPDB)\" $(POPCNT_CFLAGS) -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 $(SIMD_SSE4_2_CFLAGS) gmap_sse42_LDFLAGS = $(AM_LDFLAGS) $(STATIC_LDFLAG) gmap_sse42_LDADD = $(PTHREAD_LIBS) $(ZLIB_LIBS) $(BZLIB_LIBS) dist_gmap_sse42_SOURCES = $(GMAP_FILES) gmap_avx2_CC = $(PTHREAD_CC) gmap_avx2_CFLAGS = $(AM_CFLAGS) $(PTHREAD_CFLAGS) -DTARGET=\"$(target)\" -DGMAPDB=\"$(GMAPDB)\" $(POPCNT_CFLAGS) -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 $(SIMD_AVX2_CFLAGS) gmap_avx2_LDFLAGS = $(AM_LDFLAGS) $(STATIC_LDFLAG) gmap_avx2_LDADD = $(PTHREAD_LIBS) $(ZLIB_LIBS) $(BZLIB_LIBS) dist_gmap_avx2_SOURCES = $(GMAP_FILES) gmap_avx512_CC = $(PTHREAD_CC) gmap_avx512_CFLAGS = $(AM_CFLAGS) $(PTHREAD_CFLAGS) -DTARGET=\"$(target)\" -DGMAPDB=\"$(GMAPDB)\" $(POPCNT_CFLAGS) -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 $(SIMD_AVX512_CFLAGS) gmap_avx512_LDFLAGS = $(AM_LDFLAGS) $(STATIC_LDFLAG) gmap_avx512_LDADD = $(PTHREAD_LIBS) $(ZLIB_LIBS) $(BZLIB_LIBS) dist_gmap_avx512_SOURCES = $(GMAP_FILES) GMAPL_FILES = bool.h types.h separator.h comp.h \ except.c except.h assert.c assert.h mem.c mem.h \ intlist.c intlist.h list.c list.h \ littleendian.c littleendian.h bigendian.c bigendian.h \ univinterval.c univinterval.h interval.c interval.h uintlist.c uintlist.h uint8list.c uint8list.h \ stopwatch.c stopwatch.h semaphore.c semaphore.h access.c access.h \ filestring.c filestring.h \ iit-read-univ.c iit-read-univ.h iitdef.h iit-read.c iit-read.h \ md5.c md5.h complement.h bzip2.c bzip2.h fopen.c fopen.h sequence.c sequence.h reader.c reader.h \ genomicpos.c genomicpos.h compress.c compress.h compress-write.c compress-write.h \ gbuffer.c gbuffer.h genome.c genome.h \ popcount.c popcount.h genome128_hr.c genome128_hr.h genome_sites.c genome_sites.h \ genome-write.c genome-write.h \ bitpack64-read.c bitpack64-read.h bitpack64-readtwo.c bitpack64-readtwo.h \ filesuffix.h indexdbdef.h indexdb.c indexdb.h \ epu16-bitpack64-read.c epu16-bitpack64-read.h epu16-bitpack64-readtwo.c epu16-bitpack64-readtwo.h \ oligo.c oligo.h block.c block.h \ chrom.c chrom.h segmentpos.c segmentpos.h \ chrnum.c chrnum.h uinttable.c uinttable.h gregion.c gregion.h \ matchdef.h match.c match.h matchpool.c matchpool.h \ diagnostic.c diagnostic.h stage1.c stage1.h \ diagdef.h diag.c diag.h diagpool.c diagpool.h \ cmet.c cmet.h atoi.c atoi.h \ orderstat.c orderstat.h oligoindex_hr.c oligoindex_hr.h \ transcript.c transcript.h \ scores.h intron.c intron.h maxent.c maxent.h maxent_hr.c maxent_hr.h samflags.h pairdef.h pair.c pair.h \ pairpool.c pairpool.h cellpool.c cellpool.h stage2.c stage2.h \ doublelist.c doublelist.h smooth.c smooth.h \ splicestringpool.c splicestringpool.h splicetrie_build.c splicetrie_build.h splicetrie.c splicetrie.h \ boyer-moore.c boyer-moore.h \ dynprog.c dynprog.h dynprog_simd.c dynprog_simd.h \ dynprog_single.c dynprog_single.h dynprog_genome.c dynprog_genome.h dynprog_cdna.c dynprog_cdna.h dynprog_end.c dynprog_end.h \ translation.c translation.h \ pbinom.c pbinom.h changepoint.c changepoint.h sense.h fastlog.h stage3.c stage3.h \ request.c request.h result.c result.h output.c output.h \ inbuffer.c inbuffer.h samheader.c samheader.h outbuffer.c outbuffer.h \ chimera.c chimera.h datadir.c datadir.h parserange.c parserange.h \ getline.c getline.h getopt.c getopt1.c getopt.h gmap.c # Note: dist_ commands get read by bootstrap, and don't follow the flags gmapl_nosimd_CC = $(PTHREAD_CC) gmapl_nosimd_CFLAGS = $(AM_CFLAGS) $(PTHREAD_CFLAGS) -DTARGET=\"$(target)\" -DGMAPDB=\"$(GMAPDB)\" -DLARGE_GENOMES=1 $(POPCNT_CFLAGS) gmapl_nosimd_LDFLAGS = $(AM_LDFLAGS) $(STATIC_LDFLAG) gmapl_nosimd_LDADD = $(PTHREAD_LIBS) $(ZLIB_LIBS) $(BZLIB_LIBS) dist_gmapl_nosimd_SOURCES = $(GMAPL_FILES) gmapl_sse2_CC = $(PTHREAD_CC) gmapl_sse2_CFLAGS = $(AM_CFLAGS) $(PTHREAD_CFLAGS) -DTARGET=\"$(target)\" -DGMAPDB=\"$(GMAPDB)\" -DLARGE_GENOMES=1 $(POPCNT_CFLAGS) -DHAVE_SSE2=1 $(SIMD_SSE2_CFLAGS) gmapl_sse2_LDFLAGS = $(AM_LDFLAGS) $(STATIC_LDFLAG) gmapl_sse2_LDADD = $(PTHREAD_LIBS) $(ZLIB_LIBS) $(BZLIB_LIBS) dist_gmapl_sse2_SOURCES = $(GMAPL_FILES) gmapl_ssse3_CC = $(PTHREAD_CC) gmapl_ssse3_CFLAGS = $(AM_CFLAGS) $(PTHREAD_CFLAGS) -DTARGET=\"$(target)\" -DGMAPDB=\"$(GMAPDB)\" -DLARGE_GENOMES=1 $(POPCNT_CFLAGS) -DHAVE_SSE2=1 -DHAVE_SSSE3=1 $(SIMD_SSSE3_CFLAGS) gmapl_ssse3_LDFLAGS = $(AM_LDFLAGS) $(STATIC_LDFLAG) gmapl_ssse3_LDADD = $(PTHREAD_LIBS) $(ZLIB_LIBS) $(BZLIB_LIBS) dist_gmapl_ssse3_SOURCES = $(GMAPL_FILES) gmapl_sse41_CC = $(PTHREAD_CC) gmapl_sse41_CFLAGS = $(AM_CFLAGS) $(PTHREAD_CFLAGS) -DTARGET=\"$(target)\" -DGMAPDB=\"$(GMAPDB)\" -DLARGE_GENOMES=1 $(POPCNT_CFLAGS) -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 $(SIMD_SSE4_1_CFLAGS) gmapl_sse41_LDFLAGS = $(AM_LDFLAGS) $(STATIC_LDFLAG) gmapl_sse41_LDADD = $(PTHREAD_LIBS) $(ZLIB_LIBS) $(BZLIB_LIBS) dist_gmapl_sse41_SOURCES = $(GMAPL_FILES) gmapl_sse42_CC = $(PTHREAD_CC) gmapl_sse42_CFLAGS = $(AM_CFLAGS) $(PTHREAD_CFLAGS) -DTARGET=\"$(target)\" -DGMAPDB=\"$(GMAPDB)\" -DLARGE_GENOMES=1 $(POPCNT_CFLAGS) -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 $(SIMD_SSE4_2_CFLAGS) gmapl_sse42_LDFLAGS = $(AM_LDFLAGS) $(STATIC_LDFLAG) gmapl_sse42_LDADD = $(PTHREAD_LIBS) $(ZLIB_LIBS) $(BZLIB_LIBS) dist_gmapl_sse42_SOURCES = $(GMAPL_FILES) gmapl_avx2_CC = $(PTHREAD_CC) gmapl_avx2_CFLAGS = $(AM_CFLAGS) $(PTHREAD_CFLAGS) -DTARGET=\"$(target)\" -DGMAPDB=\"$(GMAPDB)\" -DLARGE_GENOMES=1 $(POPCNT_CFLAGS) -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 $(SIMD_AVX2_CFLAGS) gmapl_avx2_LDFLAGS = $(AM_LDFLAGS) $(STATIC_LDFLAG) gmapl_avx2_LDADD = $(PTHREAD_LIBS) $(ZLIB_LIBS) $(BZLIB_LIBS) dist_gmapl_avx2_SOURCES = $(GMAPL_FILES) gmapl_avx512_CC = $(PTHREAD_CC) gmapl_avx512_CFLAGS = $(AM_CFLAGS) $(PTHREAD_CFLAGS) -DTARGET=\"$(target)\" -DGMAPDB=\"$(GMAPDB)\" -DLARGE_GENOMES=1 $(POPCNT_CFLAGS) -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 $(SIMD_AVX512_CFLAGS) gmapl_avx512_LDFLAGS = $(AM_LDFLAGS) $(STATIC_LDFLAG) gmapl_avx512_LDADD = $(PTHREAD_LIBS) $(ZLIB_LIBS) $(BZLIB_LIBS) dist_gmapl_avx512_SOURCES = $(GMAPL_FILES) GSNAP_FILES = bool.h types.h separator.h comp.h \ except.c except.h assert.c assert.h mem.c mem.h \ intlist.c intlist.h list.c list.h \ littleendian.c littleendian.h bigendian.c bigendian.h \ univinterval.c univinterval.h interval.c interval.h \ uintlist.c uintlist.h \ stopwatch.c stopwatch.h semaphore.c semaphore.h access.c access.h \ filestring.c filestring.h \ iit-read-univ.c iit-read-univ.h iitdef.h iit-read.c iit-read.h \ md5.c md5.h complement.h bzip2.c bzip2.h sequence.c sequence.h reader.c reader.h \ genomicpos.c genomicpos.h compress.c compress.h \ genome.c genome.h transcriptome.c transcriptome.h \ popcount.c popcount.h \ genome128_hr.c genome128_hr.h genome128_consec.c genome128_consec.h genome_sites.c genome_sites.h \ bitpack64-read.c bitpack64-read.h bitpack64-readtwo.c bitpack64-readtwo.h \ merge-uint4.c merge-uint4.h merge-simd-diagonals.c merge-simd-diagonals.h \ record.h merge-simd-records.c merge-simd-records.h \ filesuffix.h indexdbdef.h indexdb.c indexdb.h \ epu16-bitpack64-read.c epu16-bitpack64-read.h epu16-bitpack64-readtwo.c epu16-bitpack64-readtwo.h \ localdbdef.h localdb.c localdb.h \ oligo.c oligo.h \ chrom.c chrom.h segmentpos.c segmentpos.h \ chrnum.c chrnum.h \ maxent_hr.c maxent_hr.h cigar.c cigar.h samflags.h samprint.c samprint.h \ mapq.c mapq.h fopen.c fopen.h shortread.c shortread.h substring.c substring.h junction.c junction.h \ transcript.c transcript.h method.c method.h stage3hrdef.h stage3hr.c stage3hr.h \ ladder.c ladder.h concordance.c concordance.h \ cmet.c cmet.h atoi.c atoi.h \ comp.h maxent.c maxent.h pairdef.h pair.c pair.h pairpool.c pairpool.h diag.c diag.h diagpool.c diagpool.h \ orderstat.c orderstat.h oligoindex_hr.c oligoindex_hr.h cellpool.c cellpool.h stage2.c stage2.h \ intron.c intron.h boyer-moore.c boyer-moore.h changepoint.c changepoint.h pbinom.c pbinom.h \ dynprog.c dynprog.h dynprog_simd.c dynprog_simd.h \ dynprog_single.c dynprog_single.h dynprog_genome.c dynprog_genome.h dynprog_cdna.c dynprog_cdna.h dynprog_end.c dynprog_end.h \ gbuffer.c gbuffer.h \ doublelist.c doublelist.h smooth.c smooth.h \ chimera.c chimera.h sense.h fastlog.h stage3.c stage3.h \ splicestringpool.c splicestringpool.h splicetrie_build.c splicetrie_build.h splicetrie.c splicetrie.h \ splice.c splice.h indel.c indel.h bitpack64-access.c bitpack64-access.h \ univdiagdef.h univdiag.c univdiag.h sedgesort.c sedgesort.h \ intersect.c intersect.h kmer-search.c kmer-search.h \ path-solve.c path-solve.h extension-search.c extension-search.h segment-search.c segment-search.h \ terminal.c terminal.h distant-rna.c distant-rna.h uint8table.c uint8table.h uinttable.c uinttable.h stage1hr.c stage1hr.h \ request.c request.h resulthr.c resulthr.h output.c output.h \ inbuffer.c inbuffer.h samheader.c samheader.h outbuffer.c outbuffer.h \ datadir.c datadir.h mode.h parserange.c parserange.h \ getline.c getline.h getopt.c getopt1.c getopt.h gsnap.c # Note: dist_ commands get read by bootstrap, and don't follow the flags # Previously included -lrt for shm_open, but we are not calling that gsnap_nosimd_CC = $(PTHREAD_CC) gsnap_nosimd_CFLAGS = $(AM_CFLAGS) $(PTHREAD_CFLAGS) -DTARGET=\"$(target)\" -DGMAPDB=\"$(GMAPDB)\" -DMAX_STACK_READLENGTH=$(MAX_STACK_READLENGTH) -DGSNAP=1 $(POPCNT_CFLAGS) gsnap_nosimd_LDFLAGS = $(AM_LDFLAGS) $(STATIC_LDFLAG) gsnap_nosimd_LDADD = $(PTHREAD_LIBS) $(ZLIB_LIBS) $(BZLIB_LIBS) dist_gsnap_nosimd_SOURCES = $(GSNAP_FILES) gsnap_sse2_CC = $(PTHREAD_CC) gsnap_sse2_CFLAGS = $(AM_CFLAGS) $(PTHREAD_CFLAGS) -DTARGET=\"$(target)\" -DGMAPDB=\"$(GMAPDB)\" -DMAX_STACK_READLENGTH=$(MAX_STACK_READLENGTH) -DGSNAP=1 $(POPCNT_CFLAGS) -DHAVE_SSE2=1 $(SIMD_SSE2_CFLAGS) gsnap_sse2_LDFLAGS = $(AM_LDFLAGS) $(STATIC_LDFLAG) gsnap_sse2_LDADD = $(PTHREAD_LIBS) $(ZLIB_LIBS) $(BZLIB_LIBS) dist_gsnap_sse2_SOURCES = $(GSNAP_FILES) gsnap_ssse3_CC = $(PTHREAD_CC) gsnap_ssse3_CFLAGS = $(AM_CFLAGS) $(PTHREAD_CFLAGS) -DTARGET=\"$(target)\" -DGMAPDB=\"$(GMAPDB)\" -DMAX_STACK_READLENGTH=$(MAX_STACK_READLENGTH) -DGSNAP=1 $(POPCNT_CFLAGS) -DHAVE_SSE2=1 -DHAVE_SSSE3=1 $(SIMD_SSSE3_CFLAGS) gsnap_ssse3_LDFLAGS = $(AM_LDFLAGS) $(STATIC_LDFLAG) gsnap_ssse3_LDADD = $(PTHREAD_LIBS) $(ZLIB_LIBS) $(BZLIB_LIBS) dist_gsnap_ssse3_SOURCES = $(GSNAP_FILES) gsnap_sse41_CC = $(PTHREAD_CC) gsnap_sse41_CFLAGS = $(AM_CFLAGS) $(PTHREAD_CFLAGS) -DTARGET=\"$(target)\" -DGMAPDB=\"$(GMAPDB)\" -DMAX_STACK_READLENGTH=$(MAX_STACK_READLENGTH) -DGSNAP=1 $(POPCNT_CFLAGS) -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 $(SIMD_SSE4_1_CFLAGS) gsnap_sse41_LDFLAGS = $(AM_LDFLAGS) $(STATIC_LDFLAG) gsnap_sse41_LDADD = $(PTHREAD_LIBS) $(ZLIB_LIBS) $(BZLIB_LIBS) dist_gsnap_sse41_SOURCES = $(GSNAP_FILES) gsnap_sse42_CC = $(PTHREAD_CC) gsnap_sse42_CFLAGS = $(AM_CFLAGS) $(PTHREAD_CFLAGS) -DTARGET=\"$(target)\" -DGMAPDB=\"$(GMAPDB)\" -DMAX_STACK_READLENGTH=$(MAX_STACK_READLENGTH) -DGSNAP=1 $(POPCNT_CFLAGS) -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 $(SIMD_SSE4_2_CFLAGS) gsnap_sse42_LDFLAGS = $(AM_LDFLAGS) $(STATIC_LDFLAG) gsnap_sse42_LDADD = $(PTHREAD_LIBS) $(ZLIB_LIBS) $(BZLIB_LIBS) dist_gsnap_sse42_SOURCES = $(GSNAP_FILES) gsnap_avx2_CC = $(PTHREAD_CC) gsnap_avx2_CFLAGS = $(AM_CFLAGS) $(PTHREAD_CFLAGS) -DTARGET=\"$(target)\" -DGMAPDB=\"$(GMAPDB)\" -DMAX_STACK_READLENGTH=$(MAX_STACK_READLENGTH) -DGSNAP=1 $(POPCNT_CFLAGS) -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 $(SIMD_AVX2_CFLAGS) gsnap_avx2_LDFLAGS = $(AM_LDFLAGS) $(STATIC_LDFLAG) gsnap_avx2_LDADD = $(PTHREAD_LIBS) $(ZLIB_LIBS) $(BZLIB_LIBS) dist_gsnap_avx2_SOURCES = $(GSNAP_FILES) gsnap_avx512_CC = $(PTHREAD_CC) gsnap_avx512_CFLAGS = $(AM_CFLAGS) $(PTHREAD_CFLAGS) -DTARGET=\"$(target)\" -DGMAPDB=\"$(GMAPDB)\" -DMAX_STACK_READLENGTH=$(MAX_STACK_READLENGTH) -DGSNAP=1 $(POPCNT_CFLAGS) -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 $(SIMD_AVX512_CFLAGS) gsnap_avx512_LDFLAGS = $(AM_LDFLAGS) $(STATIC_LDFLAG) gsnap_avx512_LDADD = $(PTHREAD_LIBS) $(ZLIB_LIBS) $(BZLIB_LIBS) dist_gsnap_avx512_SOURCES = $(GSNAP_FILES) GSNAPL_FILES = bool.h types.h separator.h comp.h \ except.c except.h assert.c assert.h mem.c mem.h \ intlist.c intlist.h list.c list.h \ littleendian.c littleendian.h bigendian.c bigendian.h \ univinterval.c univinterval.h interval.c interval.h \ uintlist.c uintlist.h uint8list.c uint8list.h \ stopwatch.c stopwatch.h semaphore.c semaphore.h access.c access.h \ filestring.c filestring.h \ iit-read-univ.c iit-read-univ.h iitdef.h iit-read.c iit-read.h \ md5.c md5.h complement.h bzip2.c bzip2.h sequence.c sequence.h reader.c reader.h \ genomicpos.c genomicpos.h compress.c compress.h \ genome.c genome.h transcriptome.c transcriptome.h \ popcount.c popcount.h \ genome128_hr.c genome128_hr.h genome128_consec.c genome128_consec.h genome_sites.c genome_sites.h \ bitpack64-read.c bitpack64-read.h bitpack64-readtwo.c bitpack64-readtwo.h \ merge-heap-diagonals.c merge-heap-diagonals.h merge-uint4.c merge-uint4.h merge-simd-diagonals.c merge-simd-diagonals.h \ record.h merge-heap-records.c merge-heap-records.h \ filesuffix.h indexdbdef.h indexdb.c indexdb.h \ epu16-bitpack64-read.c epu16-bitpack64-read.h epu16-bitpack64-readtwo.c epu16-bitpack64-readtwo.h \ localdbdef.h localdb.c localdb.h \ oligo.c oligo.h \ chrom.c chrom.h segmentpos.c segmentpos.h \ chrnum.c chrnum.h \ maxent_hr.c maxent_hr.h cigar.c cigar.h samflags.h samprint.c samprint.h \ mapq.c mapq.h fopen.c fopen.h shortread.c shortread.h substring.c substring.h junction.c junction.h \ transcript.c transcript.h method.c method.h stage3hrdef.h stage3hr.c stage3hr.h \ ladder.c ladder.h concordance.c concordance.h \ cmet.c cmet.h atoi.c atoi.h \ comp.h maxent.c maxent.h pairdef.h pair.c pair.h pairpool.c pairpool.h diag.c diag.h diagpool.c diagpool.h \ orderstat.c orderstat.h oligoindex_hr.c oligoindex_hr.h cellpool.c cellpool.h stage2.c stage2.h \ intron.c intron.h boyer-moore.c boyer-moore.h changepoint.c changepoint.h pbinom.c pbinom.h \ dynprog.c dynprog.h dynprog_simd.c dynprog_simd.h \ dynprog_single.c dynprog_single.h dynprog_genome.c dynprog_genome.h dynprog_cdna.c dynprog_cdna.h dynprog_end.c dynprog_end.h \ gbuffer.c gbuffer.h \ doublelist.c doublelist.h smooth.c smooth.h \ chimera.c chimera.h sense.h fastlog.h stage3.c stage3.h \ splicestringpool.c splicestringpool.h splicetrie_build.c splicetrie_build.h splicetrie.c splicetrie.h \ splice.c splice.h indel.c indel.h bitpack64-access.c bitpack64-access.h \ univdiagdef.h univdiag.c univdiag.h sedgesort.c sedgesort.h \ intersect.c intersect.h kmer-search.c kmer-search.h \ path-solve.c path-solve.h extension-search.c extension-search.h segment-search.c segment-search.h \ terminal.c terminal.h distant-rna.c distant-rna.h uint8table.c uint8table.h uinttable.c uinttable.h stage1hr.c stage1hr.h \ request.c request.h resulthr.c resulthr.h output.c output.h \ inbuffer.c inbuffer.h samheader.c samheader.h outbuffer.c outbuffer.h \ datadir.c datadir.h mode.h parserange.c parserange.h \ getline.c getline.h getopt.c getopt1.c getopt.h gsnap.c # Note: dist_ commands get read by bootstrap, and don't follow the flags gsnapl_nosimd_CC = $(PTHREAD_CC) gsnapl_nosimd_CFLAGS = $(AM_CFLAGS) $(PTHREAD_CFLAGS) -DTARGET=\"$(target)\" -DGMAPDB=\"$(GMAPDB)\" -DMAX_STACK_READLENGTH=$(MAX_STACK_READLENGTH) -DGSNAP=1 -DLARGE_GENOMES=1 $(POPCNT_CFLAGS) gsnapl_nosimd_LDFLAGS = $(AM_LDFLAGS) $(STATIC_LDFLAG) gsnapl_nosimd_LDADD = $(PTHREAD_LIBS) $(ZLIB_LIBS) $(BZLIB_LIBS) dist_gsnapl_nosimd_SOURCES = $(GSNAPL_FILES) gsnapl_sse2_CC = $(PTHREAD_CC) gsnapl_sse2_CFLAGS = $(AM_CFLAGS) $(PTHREAD_CFLAGS) -DTARGET=\"$(target)\" -DGMAPDB=\"$(GMAPDB)\" -DMAX_STACK_READLENGTH=$(MAX_STACK_READLENGTH) -DGSNAP=1 -DLARGE_GENOMES=1 $(POPCNT_CFLAGS) -DHAVE_SSE2=1 $(SIMD_SSE2_CFLAGS) gsnapl_sse2_LDFLAGS = $(AM_LDFLAGS) $(STATIC_LDFLAG) gsnapl_sse2_LDADD = $(PTHREAD_LIBS) $(ZLIB_LIBS) $(BZLIB_LIBS) dist_gsnapl_sse2_SOURCES = $(GSNAPL_FILES) gsnapl_ssse3_CC = $(PTHREAD_CC) gsnapl_ssse3_CFLAGS = $(AM_CFLAGS) $(PTHREAD_CFLAGS) -DTARGET=\"$(target)\" -DGMAPDB=\"$(GMAPDB)\" -DMAX_STACK_READLENGTH=$(MAX_STACK_READLENGTH) -DGSNAP=1 -DLARGE_GENOMES=1 $(POPCNT_CFLAGS) -DHAVE_SSE2=1 -DHAVE_SSSE3=1 $(SIMD_SSSE3_CFLAGS) gsnapl_ssse3_LDFLAGS = $(AM_LDFLAGS) $(STATIC_LDFLAG) gsnapl_ssse3_LDADD = $(PTHREAD_LIBS) $(ZLIB_LIBS) $(BZLIB_LIBS) dist_gsnapl_ssse3_SOURCES = $(GSNAPL_FILES) gsnapl_sse41_CC = $(PTHREAD_CC) gsnapl_sse41_CFLAGS = $(AM_CFLAGS) $(PTHREAD_CFLAGS) -DTARGET=\"$(target)\" -DGMAPDB=\"$(GMAPDB)\" -DMAX_STACK_READLENGTH=$(MAX_STACK_READLENGTH) -DGSNAP=1 -DLARGE_GENOMES=1 $(POPCNT_CFLAGS) -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 $(SIMD_SSE4_1_CFLAGS) gsnapl_sse41_LDFLAGS = $(AM_LDFLAGS) $(STATIC_LDFLAG) gsnapl_sse41_LDADD = $(PTHREAD_LIBS) $(ZLIB_LIBS) $(BZLIB_LIBS) dist_gsnapl_sse41_SOURCES = $(GSNAPL_FILES) gsnapl_sse42_CC = $(PTHREAD_CC) gsnapl_sse42_CFLAGS = $(AM_CFLAGS) $(PTHREAD_CFLAGS) -DTARGET=\"$(target)\" -DGMAPDB=\"$(GMAPDB)\" -DMAX_STACK_READLENGTH=$(MAX_STACK_READLENGTH) -DGSNAP=1 -DLARGE_GENOMES=1 $(POPCNT_CFLAGS) -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 $(SIMD_SSE4_2_CFLAGS) gsnapl_sse42_LDFLAGS = $(AM_LDFLAGS) $(STATIC_LDFLAG) gsnapl_sse42_LDADD = $(PTHREAD_LIBS) $(ZLIB_LIBS) $(BZLIB_LIBS) dist_gsnapl_sse42_SOURCES = $(GSNAPL_FILES) gsnapl_avx2_CC = $(PTHREAD_CC) gsnapl_avx2_CFLAGS = $(AM_CFLAGS) $(PTHREAD_CFLAGS) -DTARGET=\"$(target)\" -DGMAPDB=\"$(GMAPDB)\" -DMAX_STACK_READLENGTH=$(MAX_STACK_READLENGTH) -DGSNAP=1 -DLARGE_GENOMES=1 $(POPCNT_CFLAGS) -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 $(SIMD_AVX2_CFLAGS) gsnapl_avx2_LDFLAGS = $(AM_LDFLAGS) $(STATIC_LDFLAG) gsnapl_avx2_LDADD = $(PTHREAD_LIBS) $(ZLIB_LIBS) $(BZLIB_LIBS) dist_gsnapl_avx2_SOURCES = $(GSNAPL_FILES) gsnapl_avx512_CC = $(PTHREAD_CC) gsnapl_avx512_CFLAGS = $(AM_CFLAGS) $(PTHREAD_CFLAGS) -DTARGET=\"$(target)\" -DGMAPDB=\"$(GMAPDB)\" -DMAX_STACK_READLENGTH=$(MAX_STACK_READLENGTH) -DGSNAP=1 -DLARGE_GENOMES=1 $(POPCNT_CFLAGS) -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 $(SIMD_AVX512_CFLAGS) gsnapl_avx512_LDFLAGS = $(AM_LDFLAGS) $(STATIC_LDFLAG) gsnapl_avx512_LDADD = $(PTHREAD_LIBS) $(ZLIB_LIBS) $(BZLIB_LIBS) dist_gsnapl_avx512_SOURCES = $(GSNAPL_FILES) # Build as a non-SIMD program UNIQSCAN_FILES = bool.h types.h separator.h comp.h \ except.c except.h assert.c assert.h mem.c mem.h \ intlist.c intlist.h list.c list.h \ littleendian.c littleendian.h bigendian.c bigendian.h \ univinterval.c univinterval.h interval.c interval.h uintlist.c uintlist.h \ stopwatch.c stopwatch.h semaphore.c semaphore.h access.c access.h \ filestring.c filestring.h \ iit-read-univ.c iit-read-univ.h iitdef.h iit-read.c iit-read.h \ md5.c md5.h complement.h bzip2.c bzip2.h sequence.c sequence.h reader.c reader.h \ genomicpos.c genomicpos.h compress.c compress.h \ genome.c genome.h transcriptome.c transcriptome.h \ popcount.c popcount.h genome128_hr.c genome128_hr.h genome128_consec.c genome128_consec.h genome_sites.c genome_sites.h \ bitpack64-read.c bitpack64-read.h bitpack64-readtwo.c bitpack64-readtwo.h \ merge-simd-diagonals.c merge-simd-diagonals.h \ record.h merge-simd-records.c merge-simd-records.h \ filesuffix.h indexdbdef.h indexdb.c indexdb.h \ oligo.c oligo.h \ chrom.c chrom.h segmentpos.c segmentpos.h \ chrnum.c chrnum.h \ maxent_hr.c maxent_hr.h \ mapq.c mapq.h fopen.c fopen.h shortread.c shortread.h substring.c substring.h junction.c junction.h \ transcript.c transcript.h method.c method.h stage3hrdef.h stage3hr.c stage3hr.h \ ladder.c ladder.h concordance.c concordance.h \ cmet.c cmet.h atoi.c atoi.h \ cigar.c cigar.h \ comp.h maxent.c maxent.h pairdef.h pair.c pair.h pairpool.c pairpool.h diag.c diag.h diagpool.c diagpool.h \ orderstat.c orderstat.h oligoindex_hr.c oligoindex_hr.h cellpool.c cellpool.h stage2.c stage2.h \ intron.c intron.h boyer-moore.c boyer-moore.h changepoint.c changepoint.h pbinom.c pbinom.h \ dynprog.c dynprog.h dynprog_simd.c dynprog_simd.h \ dynprog_single.c dynprog_single.h dynprog_genome.c dynprog_genome.h dynprog_cdna.c dynprog_cdna.h dynprog_end.c dynprog_end.h \ translation.c translation.h \ doublelist.c doublelist.h smooth.c smooth.h \ chimera.c chimera.h sense.h fastlog.h stage3.c stage3.h \ splicestringpool.c splicestringpool.h splicetrie_build.c splicetrie_build.h splicetrie.c splicetrie.h \ splice.c splice.h indel.c indel.h bitpack64-access.c bitpack64-access.h \ univdiagdef.h univdiag.c univdiag.h sedgesort.c sedgesort.h \ intersect.c intersect.h kmer-search.c kmer-search.h \ path-solve.c path-solve.h extension-search.c extension-search.h segment-search.c segment-search.h \ terminal.c terminal.h distant-rna.c distant-rna.h uint8table.c uint8table.h uinttable.c uinttable.h stage1hr.c stage1hr.h \ resulthr.c resulthr.h \ datadir.c datadir.h mode.h parserange.c parserange.h \ getline.c getline.h getopt.c getopt1.c getopt.h uniqscan.c uniqscan_CC = $(PTHREAD_CC) uniqscan_CFLAGS = $(AM_CFLAGS) $(PTHREAD_CFLAGS) -DTARGET=\"$(target)\" -DGMAPDB=\"$(GMAPDB)\" -DMAX_STACK_READLENGTH=$(MAX_STACK_READLENGTH) -DGSNAP=1 $(POPCNT_CFLAGS) uniqscan_LDFLAGS = $(AM_LDFLAGS) $(STATIC_LDFLAG) uniqscan_LDADD = $(PTHREAD_LIBS) $(ZLIB_LIBS) $(BZLIB_LIBS) dist_uniqscan_SOURCES = $(UNIQSCAN_FILES) UNIQSCANL_FILES = bool.h types.h separator.h comp.h \ except.c except.h assert.c assert.h mem.c mem.h \ intlist.c intlist.h list.c list.h \ littleendian.c littleendian.h bigendian.c bigendian.h \ univinterval.c univinterval.h interval.c interval.h uintlist.c uintlist.h uint8list.c uint8list.h \ stopwatch.c stopwatch.h semaphore.c semaphore.h access.c access.h \ filestring.c filestring.h \ iit-read-univ.c iit-read-univ.h iitdef.h iit-read.c iit-read.h \ md5.c md5.h complement.h bzip2.c bzip2.h sequence.c sequence.h reader.c reader.h \ genomicpos.c genomicpos.h compress.c compress.h \ genome.c genome.h transcriptome.c transcriptome.h \ popcount.c popcount.h genome128_hr.c genome128_hr.h genome128_consec.c genome128_consec.h genome_sites.c genome_sites.h \ bitpack64-read.c bitpack64-read.h bitpack64-readtwo.c bitpack64-readtwo.h \ merge-heap-diagonals.c merge-heap-diagonals.h merge-uint4.c merge-uint4.h merge-simd-diagonals.c merge-simd-diagonals.h \ record.h merge-heap-records.c merge-heap-records.h \ filesuffix.h indexdbdef.h indexdb.c indexdb.h \ oligo.c oligo.h \ chrom.c chrom.h segmentpos.c segmentpos.h \ chrnum.c chrnum.h \ maxent_hr.c maxent_hr.h \ mapq.c mapq.h fopen.c fopen.h shortread.c shortread.h substring.c substring.h junction.c junction.h \ transcript.c transcript.h method.c method.h stage3hrdef.h stage3hr.c stage3hr.h \ ladder.c ladder.h concordance.c concordance.h \ cmet.c cmet.h atoi.c atoi.h \ cigar.c cigar.h \ comp.h maxent.c maxent.h pairdef.h pair.c pair.h pairpool.c pairpool.h diag.c diag.h diagpool.c diagpool.h \ orderstat.c orderstat.h oligoindex_hr.c oligoindex_hr.h cellpool.c cellpool.h stage2.c stage2.h \ intron.c intron.h boyer-moore.c boyer-moore.h changepoint.c changepoint.h pbinom.c pbinom.h \ dynprog.c dynprog.h dynprog_simd.c dynprog_simd.h \ dynprog_single.c dynprog_single.h dynprog_genome.c dynprog_genome.h dynprog_cdna.c dynprog_cdna.h dynprog_end.c dynprog_end.h \ translation.c translation.h \ doublelist.c doublelist.h smooth.c smooth.h \ chimera.c chimera.h sense.h fastlog.h stage3.c stage3.h \ splicestringpool.c splicestringpool.h splicetrie_build.c splicetrie_build.h splicetrie.c splicetrie.h \ splice.c splice.h indel.c indel.h bitpack64-access.c bitpack64-access.h \ univdiagdef.h univdiag.c univdiag.h sedgesort.c sedgesort.h \ intersect.c intersect.h kmer-search.c kmer-search.h \ path-solve.c path-solve.h extension-search.c extension-search.h segment-search.c segment-search.h \ terminal.c terminal.h distant-rna.c distant-rna.h uint8table.c uint8table.h uinttable.c uinttable.h stage1hr.c stage1hr.h \ resulthr.c resulthr.h \ datadir.c datadir.h mode.h parserange.c parserange.h \ getline.c getline.h getopt.c getopt1.c getopt.h uniqscan.c uniqscanl_CC = $(PTHREAD_CC) uniqscanl_CFLAGS = $(AM_CFLAGS) $(PTHREAD_CFLAGS) -DTARGET=\"$(target)\" -DGMAPDB=\"$(GMAPDB)\" -DMAX_STACK_READLENGTH=$(MAX_STACK_READLENGTH) -DGSNAP=1 -DLARGE_GENOMES=1 $(POPCNT_CFLAGS) uniqscanl_LDFLAGS = $(AM_LDFLAGS) $(STATIC_LDFLAG) uniqscanl_LDADD = $(PTHREAD_LIBS) $(ZLIB_LIBS) $(BZLIB_LIBS) dist_uniqscanl_SOURCES = $(UNIQSCANL_FILES) # Build utility programs as non-SIMD programs GMAPINDEX_FILES = bool.h types.h \ except.c except.h assert.c assert.h mem.c mem.h \ intlist.c intlist.h list.c list.h \ littleendian.c littleendian.h bigendian.c bigendian.h \ univinterval.c univinterval.h interval.c interval.h uintlist.c uintlist.h \ stopwatch.c stopwatch.h semaphore.c semaphore.h access.c access.h \ filestring.c filestring.h \ iit-read-univ.c iit-read-univ.h iit-write-univ.c iit-write-univ.h \ iitdef.h iit-read.c iit-read.h \ md5.c md5.h complement.h bzip2.c bzip2.h fopen.c fopen.h sequence.c sequence.h genome.c genome.h \ genomicpos.c genomicpos.h compress-write.c compress-write.h genome-write.c genome-write.h \ compress.c compress.h popcount.c popcount.h genome128_hr.c genome128_hr.h genome128_consec.c genome128_consec.h \ bitpack64-read.c bitpack64-read.h bitpack64-readtwo.c bitpack64-readtwo.h \ bitpack64-access.c bitpack64-access.h bitpack64-incr.c bitpack64-incr.h bitpack64-write.c bitpack64-write.h \ filesuffix.h indexdbdef.h indexdb.c indexdb.h indexdb-write.c indexdb-write.h \ epu16-bitpack64-access.c epu16-bitpack64-access.h epu16-bitpack64-incr.c epu16-bitpack64-incr.h epu16-bitpack64-write.c epu16-bitpack64-write.h \ localdbdef.h localdb-write.c localdb-write.h \ table.c table.h tableuint.c tableuint.h tableuint8.c tableuint8.h tableint.c tableint.h \ chrom.c chrom.h segmentpos.c segmentpos.h \ uint8list.c uint8list.h \ parserange.c parserange.h getline.c getline.h \ gmapindex.c gmapindex_CC = $(PTHREAD_CC) gmapindex_CFLAGS = $(AM_CFLAGS) $(PTHREAD_CFLAGS) -DUTILITYP=1 gmapindex_LDFLAGS = $(AM_LDFLAGS) $(STATIC_LDFLAG) gmapindex_LDADD = $(PTHREAD_LIBS) $(ZLIB_LIBS) $(BZLIB_LIBS) dist_gmapindex_SOURCES = $(GMAPINDEX_FILES) SNPINDEX_FILES = bool.h types.h \ except.c except.h assert.c assert.h mem.c mem.h \ intlist.c intlist.h list.c list.h \ littleendian.c littleendian.h bigendian.c bigendian.h \ univinterval.c univinterval.h interval.c interval.h uintlist.c uintlist.h \ stopwatch.c stopwatch.h semaphore.c semaphore.h access.c access.h \ filestring.c filestring.h \ iit-read-univ.c iit-read-univ.h iitdef.h iit-read.c iit-read.h \ genomicpos.c genomicpos.h compress.c compress.h compress-write.c compress-write.h \ popcount.c popcount.h genome128_hr.c genome128_hr.h genome128_consec.c genome128_consec.h \ bitpack64-read.c bitpack64-read.h bitpack64-readtwo.c bitpack64-readtwo.h \ bitpack64-access.c bitpack64-access.h bitpack64-incr.c bitpack64-incr.h bitpack64-write.c bitpack64-write.h \ filesuffix.h indexdbdef.h indexdb.c indexdb.h \ indexdb-write.c indexdb-write.h \ chrom.c chrom.h \ complement.h md5.c md5.h bzip2.c bzip2.h fopen.c fopen.h sequence.c sequence.h genome.c genome.h \ datadir.c datadir.h parserange.c parserange.h \ getline.c getline.h getopt.c getopt1.c getopt.h snpindex.c snpindex_CC = $(PTHREAD_CC) snpindex_CFLAGS = $(AM_CFLAGS) $(PTHREAD_CFLAGS) -DGMAPDB=\"$(GMAPDB)\" -DUTILITYP=1 snpindex_LDFLAGS = $(AM_LDFLAGS) $(STATIC_LDFLAG) snpindex_LDADD = $(PTHREAD_LIBS) $(ZLIB_LIBS) $(BZLIB_LIBS) dist_snpindex_SOURCES = $(SNPINDEX_FILES) CMETINDEX_FILES = bool.h types.h \ except.c except.h assert.c assert.h mem.c mem.h \ littleendian.c littleendian.h bigendian.c bigendian.h \ genomicpos.c genomicpos.h \ stopwatch.c stopwatch.h semaphore.c semaphore.h access.c access.h \ univinterval.c univinterval.h interval.h interval.c \ filestring.c filestring.h \ iit-read-univ.c iit-read-univ.h iitdef.h iit-read.h iit-read.c \ complement.h compress.c compress.h compress-write.c compress-write.h \ popcount.c popcount.h genome128_hr.c genome128_hr.h genome128_consec.c genome128_consec.h \ bitpack64-read.c bitpack64-read.h bitpack64-readtwo.c bitpack64-readtwo.h \ bitpack64-access.c bitpack64-access.h bitpack64-incr.c bitpack64-incr.h bitpack64-write.c bitpack64-write.h \ epu16-bitpack64-read.c epu16-bitpack64-read.h \ epu16-bitpack64-access.c epu16-bitpack64-access.h epu16-bitpack64-incr.c epu16-bitpack64-incr.h \ epu16-bitpack64-write.c epu16-bitpack64-write.h \ filesuffix.h indexdbdef.h indexdb.c indexdb.h indexdb-write.c indexdb-write.h \ localdbdef.h localdb.c localdb.h \ cmet.c cmet.h \ complement.h md5.c md5.h bzip2.c bzip2.h fopen.c fopen.h sequence.c sequence.h genome.c genome.h \ uintlist.c uintlist.h intlist.c intlist.h \ uint8list.c uint8list.h \ list.c list.h datadir.c datadir.h parserange.c parserange.h \ getline.c getline.h getopt.c getopt1.c getopt.h cmetindex.c cmetindex_CC = $(PTHREAD_CC) cmetindex_CFLAGS = $(AM_CFLAGS) $(PTHREAD_CFLAGS) -DGMAPDB=\"$(GMAPDB)\" -DUTILITYP=1 cmetindex_LDFLAGS = $(AM_LDFLAGS) $(STATIC_LDFLAG) cmetindex_LDADD = $(PTHREAD_LIBS) $(ZLIB_LIBS) $(BZLIB_LIBS) dist_cmetindex_SOURCES = $(CMETINDEX_FILES) ATOIINDEX_FILES = bool.h types.h \ except.c except.h assert.c assert.h mem.c mem.h \ littleendian.c littleendian.h bigendian.c bigendian.h \ genomicpos.c genomicpos.h \ stopwatch.c stopwatch.h semaphore.c semaphore.h access.c access.h \ univinterval.c univinterval.h interval.h interval.c \ filestring.c filestring.h \ iit-read-univ.c iit-read-univ.h iitdef.h iit-read.h iit-read.c \ complement.h compress.c compress.h compress-write.c compress-write.h \ popcount.c popcount.h genome128_hr.c genome128_hr.h genome128_consec.c genome128_consec.h \ bitpack64-read.c bitpack64-read.h bitpack64-readtwo.c bitpack64-readtwo.h \ bitpack64-access.c bitpack64-access.h bitpack64-incr.c bitpack64-incr.h bitpack64-write.c bitpack64-write.h \ epu16-bitpack64-read.c epu16-bitpack64-read.h \ epu16-bitpack64-access.c epu16-bitpack64-access.h epu16-bitpack64-incr.c epu16-bitpack64-incr.h \ epu16-bitpack64-write.c epu16-bitpack64-write.h \ filesuffix.h indexdbdef.h indexdb.c indexdb.h indexdb-write.c indexdb-write.h \ localdbdef.h localdb.c localdb.h \ atoi.c atoi.h \ complement.h md5.c md5.h bzip2.c bzip2.h fopen.c fopen.h sequence.c sequence.h genome.c genome.h \ uintlist.c uintlist.h intlist.c intlist.h \ uint8list.c uint8list.h \ list.c list.h datadir.c datadir.h parserange.c parserange.h \ getline.c getline.h getopt.c getopt1.c getopt.h atoiindex.c atoiindex_CC = $(PTHREAD_CC) atoiindex_CFLAGS = $(AM_CFLAGS) $(PTHREAD_CFLAGS) -DGMAPDB=\"$(GMAPDB)\" -DUTILITYP=1 atoiindex_LDFLAGS = $(AM_LDFLAGS) $(STATIC_LDFLAG) atoiindex_LDADD = $(PTHREAD_LIBS) $(ZLIB_LIBS) $(BZLIB_LIBS) dist_atoiindex_SOURCES = $(ATOIINDEX_FILES) TRINDEX_FILES = fopen.h bool.h types.h \ except.c except.h assert.c assert.h mem.c mem.h \ littleendian.c littleendian.h bigendian.c bigendian.h \ genomicpos.c genomicpos.h \ stopwatch.c stopwatch.h semaphore.c semaphore.h access.c access.h \ interval.h interval.c \ filestring.c filestring.h \ iitdef.h iit-read.h iit-read.c \ bitpack64-access.c bitpack64-access.h bitpack64-write.c bitpack64-write.h \ uintlist.c uintlist.h intlist.c intlist.h \ list.c list.h datadir.c datadir.h \ getline.c getline.h getopt.c getopt1.c getopt.h trindex.c trindex_CC = $(PTHREAD_CC) trindex_CFLAGS = $(AM_CFLAGS) $(PTHREAD_CFLAGS) -DGMAPDB=\"$(GMAPDB)\" -DUTILITYP=1 trindex_LDFLAGS = $(AM_LDFLAGS) $(STATIC_LDFLAG) trindex_LDADD = $(PTHREAD_LIBS) $(ZLIB_LIBS) $(BZLIB_LIBS) dist_trindex_SOURCES = $(TRINDEX_FILES) GET_GENOME_FILES = bool.h types.h separator.h \ except.c except.h assert.c assert.h mem.c mem.h \ intlist.c intlist.h list.c list.h \ littleendian.c littleendian.h bigendian.c bigendian.h \ univinterval.c univinterval.h interval.c interval.h uintlist.c uintlist.h \ stopwatch.c stopwatch.h semaphore.c semaphore.h access.c access.h \ filestring.c filestring.h \ iit-read-univ.c iit-read-univ.h iitdef.h iit-read.c iit-read.h \ md5.c md5.h complement.h bzip2.c bzip2.h fopen.c fopen.h sequence.c sequence.h \ genome.c genome.h \ genomicpos.c genomicpos.h chrom.c chrom.h \ chrnum.c chrnum.h \ datadir.c datadir.h parserange.c parserange.h \ getline.c getline.h \ getopt.c getopt1.c getopt.h get-genome.c get_genome_CC = $(PTHREAD_CC) get_genome_CFLAGS = $(AM_CFLAGS) $(PTHREAD_CFLAGS) -DGMAPDB=\"$(GMAPDB)\" -DUTILITYP=1 get_genome_LDFLAGS = $(AM_LDFLAGS) $(STATIC_LDFLAG) get_genome_LDADD = $(PTHREAD_LIBS) $(ZLIB_LIBS) $(BZLIB_LIBS) dist_get_genome_SOURCES = $(GET_GENOME_FILES) IIT_STORE_FILES = fopen.h bool.h types.h \ except.c except.h assert.c assert.h mem.c mem.h \ intlist.c intlist.h list.c list.h \ littleendian.c littleendian.h bigendian.c bigendian.h \ univinterval.c univinterval.h interval.c interval.h \ uintlist.c uintlist.h \ stopwatch.c stopwatch.h semaphore.c semaphore.h access.c access.h \ doublelist.c doublelist.h \ iit-write-univ.c iit-write-univ.h iitdef.h iit-write.c iit-write.h \ tableint.c tableint.h table.c table.h chrom.c chrom.h \ getline.c getline.h \ getopt.c getopt1.c getopt.h iit_store.c iit_store_CC = $(PTHREAD_CC) iit_store_CFLAGS = $(AM_CFLAGS) $(PTHREAD_CFLAGS) -DUTILITYP=1 iit_store_LDFLAGS = $(AM_LDFLAGS) $(STATIC_LDFLAG) iit_store_LDADD = $(PTHREAD_LIBS) dist_iit_store_SOURCES = $(IIT_STORE_FILES) IIT_GET_FILES = fopen.h bool.h types.h \ except.c except.h assert.c assert.h mem.c mem.h \ intlist.c intlist.h list.c list.h \ littleendian.c littleendian.h bigendian.c bigendian.h \ univinterval.c univinterval.h interval.c interval.h \ uintlist.c uintlist.h \ stopwatch.c stopwatch.h semaphore.c semaphore.h access.c access.h \ filestring.c filestring.h \ iit-read-univ.c iit-read-univ.h iitdef.h iit-read.c iit-read.h \ complement.h parserange.c parserange.h \ getline.c getline.h \ getopt.c getopt1.c getopt.h iit_get.c iit_get_CC = $(PTHREAD_CC) iit_get_CFLAGS = $(AM_CFLAGS) $(PTHREAD_CFLAGS) -DUTILITYP=1 iit_get_LDFLAGS = $(AM_LDFLAGS) $(STATIC_LDFLAG) iit_get_LDADD = $(PTHREAD_LIBS) dist_iit_get_SOURCES = $(IIT_GET_FILES) IIT_DUMP_FILES = fopen.h bool.h types.h \ except.c except.h assert.c assert.h mem.c mem.h \ littleendian.c littleendian.h bigendian.c bigendian.h \ intlist.c intlist.h list.c list.h \ univinterval.c univinterval.h interval.c interval.h uintlist.c uintlist.h \ stopwatch.c stopwatch.h semaphore.c semaphore.h access.c access.h \ filestring.c filestring.h \ iit-read-univ.c iit-read-univ.h iitdef.h iit-read.c iit-read.h parserange.c parserange.h \ getopt.c getopt1.c getopt.h iit_dump.c iit_dump_CC = $(PTHREAD_CC) iit_dump_CFLAGS = $(AM_CFLAGS) $(PTHREAD_CFLAGS) -DUTILITYP=1 iit_dump_LDFLAGS = $(AM_LDFLAGS) $(STATIC_LDFLAG) iit_dump_LDADD = $(PTHREAD_LIBS) dist_iit_dump_SOURCES = $(IIT_DUMP_FILES) IIT_PILEUP_FILES = fopen.h bool.h types.h \ except.c except.h assert.c assert.h mem.c mem.h \ semaphore.c semaphore.h stopwatch.c stopwatch.h access.c access.h \ list.c list.h filestring.c filestring.h \ genomicpos.h interval.c interval.h \ intlist.c intlist.h uintlist.c uintlist.h iitdef.h iit-read.c iit-read.h \ univinterval.c univinterval.h iit-read-univ.c iit-read-univ.h parserange.c parserange.h \ getopt.c getopt1.c getopt.h iit_pileup.c iit_pileup_CC = $(PTHREAD_CC) iit_pileup_CFLAGS = $(AM_CFLAGS) $(PTHREAD_CFLAGS) -DUTILITYP=1 iit_pileup_LDFLAGS = $(AM_LDFLAGS) $(STATIC_LDFLAG) iit_pileup_LDADD = $(PTHREAD_LIBS) dist_iit_pileup_SOURCES = $(IIT_PILEUP_FILES) SAM_SORT_FILES = bool.h types.h \ except.c except.h assert.c assert.h mem.c mem.h \ littleendian.c littleendian.h bigendian.c bigendian.h \ genomicpos.h chrnum.h \ intlist.c intlist.h list.c list.h \ stopwatch.c stopwatch.h semaphore.c semaphore.h access.c access.h \ univinterval.c univinterval.h interval.c interval.h \ uintlist.c uintlist.h \ filestring.c filestring.h \ parserange.c parserange.h iit-read-univ.c iit-read-univ.h iitdef.h iit-read.c iit-read.h \ samflags.h samheader.c samheader.h samread.c samread.h \ getline.c getline.h datadir.c datadir.h \ getopt.c getopt1.c getopt.h sam_sort.c sam_sort_CC = $(PTHREAD_CC) sam_sort_CFLAGS = $(AM_CFLAGS) $(PTHREAD_CFLAGS) -DGMAPDB=\"$(GMAPDB)\" -DUTILITYP=1 sam_sort_LDFLAGS = $(AM_LDFLAGS) $(STATIC_LDFLAG) sam_sort_LDADD = $(PTHREAD_LIBS) dist_sam_sort_SOURCES = $(SAM_SORT_FILES) all: config.h $(MAKE) $(AM_MAKEFLAGS) all-am .SUFFIXES: .SUFFIXES: .c .lo .o .obj $(srcdir)/Makefile.in: # $(srcdir)/Makefile.am $(am__configure_deps) @for dep in $?; do \ case '$(am__configure_deps)' in \ *$$dep*) \ ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \ && { if test -f $@; then exit 0; else break; fi; }; \ exit 1;; \ esac; \ done; \ echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu src/Makefile'; \ $(am__cd) $(top_srcdir) && \ $(AUTOMAKE) --gnu src/Makefile Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status @case '$?' in \ *config.status*) \ cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \ *) \ echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && 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./$(DEPDIR)/gmap_avx512-bitpack64-read.Po include ./$(DEPDIR)/gmap_avx512-bitpack64-readtwo.Po include ./$(DEPDIR)/gmap_avx512-block.Po include ./$(DEPDIR)/gmap_avx512-boyer-moore.Po include ./$(DEPDIR)/gmap_avx512-bzip2.Po include ./$(DEPDIR)/gmap_avx512-cellpool.Po include ./$(DEPDIR)/gmap_avx512-changepoint.Po include ./$(DEPDIR)/gmap_avx512-chimera.Po include ./$(DEPDIR)/gmap_avx512-chrnum.Po include ./$(DEPDIR)/gmap_avx512-chrom.Po include ./$(DEPDIR)/gmap_avx512-cmet.Po include ./$(DEPDIR)/gmap_avx512-compress-write.Po include ./$(DEPDIR)/gmap_avx512-compress.Po include ./$(DEPDIR)/gmap_avx512-datadir.Po include ./$(DEPDIR)/gmap_avx512-diag.Po include ./$(DEPDIR)/gmap_avx512-diagnostic.Po include ./$(DEPDIR)/gmap_avx512-diagpool.Po include ./$(DEPDIR)/gmap_avx512-doublelist.Po include ./$(DEPDIR)/gmap_avx512-dynprog.Po include ./$(DEPDIR)/gmap_avx512-dynprog_cdna.Po include ./$(DEPDIR)/gmap_avx512-dynprog_end.Po include ./$(DEPDIR)/gmap_avx512-dynprog_genome.Po include ./$(DEPDIR)/gmap_avx512-dynprog_simd.Po include ./$(DEPDIR)/gmap_avx512-dynprog_single.Po include ./$(DEPDIR)/gmap_avx512-epu16-bitpack64-read.Po include ./$(DEPDIR)/gmap_avx512-epu16-bitpack64-readtwo.Po include ./$(DEPDIR)/gmap_avx512-except.Po include ./$(DEPDIR)/gmap_avx512-filestring.Po include ./$(DEPDIR)/gmap_avx512-fopen.Po include ./$(DEPDIR)/gmap_avx512-gbuffer.Po include ./$(DEPDIR)/gmap_avx512-genome-write.Po include ./$(DEPDIR)/gmap_avx512-genome.Po include ./$(DEPDIR)/gmap_avx512-genome128_hr.Po include ./$(DEPDIR)/gmap_avx512-genome_sites.Po include ./$(DEPDIR)/gmap_avx512-genomicpos.Po include ./$(DEPDIR)/gmap_avx512-getline.Po include ./$(DEPDIR)/gmap_avx512-getopt.Po include ./$(DEPDIR)/gmap_avx512-getopt1.Po include ./$(DEPDIR)/gmap_avx512-gmap.Po include ./$(DEPDIR)/gmap_avx512-gregion.Po include ./$(DEPDIR)/gmap_avx512-iit-read-univ.Po include ./$(DEPDIR)/gmap_avx512-iit-read.Po include ./$(DEPDIR)/gmap_avx512-inbuffer.Po include ./$(DEPDIR)/gmap_avx512-indexdb.Po include ./$(DEPDIR)/gmap_avx512-interval.Po include ./$(DEPDIR)/gmap_avx512-intlist.Po include ./$(DEPDIR)/gmap_avx512-intron.Po include ./$(DEPDIR)/gmap_avx512-list.Po include ./$(DEPDIR)/gmap_avx512-littleendian.Po include ./$(DEPDIR)/gmap_avx512-match.Po include ./$(DEPDIR)/gmap_avx512-matchpool.Po include ./$(DEPDIR)/gmap_avx512-maxent.Po include ./$(DEPDIR)/gmap_avx512-maxent_hr.Po include ./$(DEPDIR)/gmap_avx512-md5.Po include ./$(DEPDIR)/gmap_avx512-mem.Po include ./$(DEPDIR)/gmap_avx512-oligo.Po include ./$(DEPDIR)/gmap_avx512-oligoindex_hr.Po include ./$(DEPDIR)/gmap_avx512-orderstat.Po include ./$(DEPDIR)/gmap_avx512-outbuffer.Po include ./$(DEPDIR)/gmap_avx512-output.Po include ./$(DEPDIR)/gmap_avx512-pair.Po include ./$(DEPDIR)/gmap_avx512-pairpool.Po include ./$(DEPDIR)/gmap_avx512-parserange.Po include ./$(DEPDIR)/gmap_avx512-pbinom.Po include ./$(DEPDIR)/gmap_avx512-popcount.Po include ./$(DEPDIR)/gmap_avx512-reader.Po include ./$(DEPDIR)/gmap_avx512-request.Po include ./$(DEPDIR)/gmap_avx512-result.Po include ./$(DEPDIR)/gmap_avx512-samheader.Po include ./$(DEPDIR)/gmap_avx512-segmentpos.Po include ./$(DEPDIR)/gmap_avx512-semaphore.Po include ./$(DEPDIR)/gmap_avx512-sequence.Po include ./$(DEPDIR)/gmap_avx512-smooth.Po include ./$(DEPDIR)/gmap_avx512-splicestringpool.Po include ./$(DEPDIR)/gmap_avx512-splicetrie.Po include ./$(DEPDIR)/gmap_avx512-splicetrie_build.Po include ./$(DEPDIR)/gmap_avx512-stage1.Po include ./$(DEPDIR)/gmap_avx512-stage2.Po include ./$(DEPDIR)/gmap_avx512-stage3.Po include ./$(DEPDIR)/gmap_avx512-stopwatch.Po include ./$(DEPDIR)/gmap_avx512-transcript.Po include ./$(DEPDIR)/gmap_avx512-translation.Po include ./$(DEPDIR)/gmap_avx512-uintlist.Po include ./$(DEPDIR)/gmap_avx512-uinttable.Po include ./$(DEPDIR)/gmap_avx512-univinterval.Po include ./$(DEPDIR)/gmap_sse2-access.Po include ./$(DEPDIR)/gmap_sse2-assert.Po include ./$(DEPDIR)/gmap_sse2-atoi.Po include ./$(DEPDIR)/gmap_sse2-bigendian.Po include ./$(DEPDIR)/gmap_sse2-bitpack64-read.Po include ./$(DEPDIR)/gmap_sse2-bitpack64-readtwo.Po include ./$(DEPDIR)/gmap_sse2-block.Po include ./$(DEPDIR)/gmap_sse2-boyer-moore.Po include ./$(DEPDIR)/gmap_sse2-bzip2.Po include ./$(DEPDIR)/gmap_sse2-cellpool.Po include ./$(DEPDIR)/gmap_sse2-changepoint.Po include ./$(DEPDIR)/gmap_sse2-chimera.Po include ./$(DEPDIR)/gmap_sse2-chrnum.Po include ./$(DEPDIR)/gmap_sse2-chrom.Po include ./$(DEPDIR)/gmap_sse2-cmet.Po include ./$(DEPDIR)/gmap_sse2-compress-write.Po include ./$(DEPDIR)/gmap_sse2-compress.Po include ./$(DEPDIR)/gmap_sse2-datadir.Po include ./$(DEPDIR)/gmap_sse2-diag.Po include ./$(DEPDIR)/gmap_sse2-diagnostic.Po include ./$(DEPDIR)/gmap_sse2-diagpool.Po include ./$(DEPDIR)/gmap_sse2-doublelist.Po include ./$(DEPDIR)/gmap_sse2-dynprog.Po include ./$(DEPDIR)/gmap_sse2-dynprog_cdna.Po include ./$(DEPDIR)/gmap_sse2-dynprog_end.Po include ./$(DEPDIR)/gmap_sse2-dynprog_genome.Po include ./$(DEPDIR)/gmap_sse2-dynprog_simd.Po include ./$(DEPDIR)/gmap_sse2-dynprog_single.Po include ./$(DEPDIR)/gmap_sse2-epu16-bitpack64-read.Po include ./$(DEPDIR)/gmap_sse2-epu16-bitpack64-readtwo.Po include ./$(DEPDIR)/gmap_sse2-except.Po include ./$(DEPDIR)/gmap_sse2-filestring.Po include ./$(DEPDIR)/gmap_sse2-fopen.Po include ./$(DEPDIR)/gmap_sse2-gbuffer.Po include ./$(DEPDIR)/gmap_sse2-genome-write.Po include ./$(DEPDIR)/gmap_sse2-genome.Po include ./$(DEPDIR)/gmap_sse2-genome128_hr.Po include ./$(DEPDIR)/gmap_sse2-genome_sites.Po include ./$(DEPDIR)/gmap_sse2-genomicpos.Po include ./$(DEPDIR)/gmap_sse2-getline.Po include ./$(DEPDIR)/gmap_sse2-getopt.Po include ./$(DEPDIR)/gmap_sse2-getopt1.Po include ./$(DEPDIR)/gmap_sse2-gmap.Po include ./$(DEPDIR)/gmap_sse2-gregion.Po include ./$(DEPDIR)/gmap_sse2-iit-read-univ.Po include ./$(DEPDIR)/gmap_sse2-iit-read.Po include ./$(DEPDIR)/gmap_sse2-inbuffer.Po include ./$(DEPDIR)/gmap_sse2-indexdb.Po include ./$(DEPDIR)/gmap_sse2-interval.Po include ./$(DEPDIR)/gmap_sse2-intlist.Po include ./$(DEPDIR)/gmap_sse2-intron.Po include ./$(DEPDIR)/gmap_sse2-list.Po include ./$(DEPDIR)/gmap_sse2-littleendian.Po include ./$(DEPDIR)/gmap_sse2-match.Po include ./$(DEPDIR)/gmap_sse2-matchpool.Po include ./$(DEPDIR)/gmap_sse2-maxent.Po include ./$(DEPDIR)/gmap_sse2-maxent_hr.Po include ./$(DEPDIR)/gmap_sse2-md5.Po include ./$(DEPDIR)/gmap_sse2-mem.Po include ./$(DEPDIR)/gmap_sse2-oligo.Po include ./$(DEPDIR)/gmap_sse2-oligoindex_hr.Po include ./$(DEPDIR)/gmap_sse2-orderstat.Po include ./$(DEPDIR)/gmap_sse2-outbuffer.Po include ./$(DEPDIR)/gmap_sse2-output.Po include ./$(DEPDIR)/gmap_sse2-pair.Po include ./$(DEPDIR)/gmap_sse2-pairpool.Po include ./$(DEPDIR)/gmap_sse2-parserange.Po include ./$(DEPDIR)/gmap_sse2-pbinom.Po include ./$(DEPDIR)/gmap_sse2-popcount.Po include ./$(DEPDIR)/gmap_sse2-reader.Po include ./$(DEPDIR)/gmap_sse2-request.Po include ./$(DEPDIR)/gmap_sse2-result.Po include ./$(DEPDIR)/gmap_sse2-samheader.Po include ./$(DEPDIR)/gmap_sse2-segmentpos.Po include ./$(DEPDIR)/gmap_sse2-semaphore.Po include ./$(DEPDIR)/gmap_sse2-sequence.Po include ./$(DEPDIR)/gmap_sse2-smooth.Po include ./$(DEPDIR)/gmap_sse2-splicestringpool.Po include ./$(DEPDIR)/gmap_sse2-splicetrie.Po include ./$(DEPDIR)/gmap_sse2-splicetrie_build.Po include ./$(DEPDIR)/gmap_sse2-stage1.Po include ./$(DEPDIR)/gmap_sse2-stage2.Po include ./$(DEPDIR)/gmap_sse2-stage3.Po include ./$(DEPDIR)/gmap_sse2-stopwatch.Po include ./$(DEPDIR)/gmap_sse2-transcript.Po include ./$(DEPDIR)/gmap_sse2-translation.Po include ./$(DEPDIR)/gmap_sse2-uintlist.Po include ./$(DEPDIR)/gmap_sse2-uinttable.Po include ./$(DEPDIR)/gmap_sse2-univinterval.Po include ./$(DEPDIR)/gmap_sse41-access.Po include ./$(DEPDIR)/gmap_sse41-assert.Po include ./$(DEPDIR)/gmap_sse41-atoi.Po include ./$(DEPDIR)/gmap_sse41-bigendian.Po include ./$(DEPDIR)/gmap_sse41-bitpack64-read.Po include ./$(DEPDIR)/gmap_sse41-bitpack64-readtwo.Po include ./$(DEPDIR)/gmap_sse41-block.Po include ./$(DEPDIR)/gmap_sse41-boyer-moore.Po include ./$(DEPDIR)/gmap_sse41-bzip2.Po include ./$(DEPDIR)/gmap_sse41-cellpool.Po include ./$(DEPDIR)/gmap_sse41-changepoint.Po include ./$(DEPDIR)/gmap_sse41-chimera.Po include ./$(DEPDIR)/gmap_sse41-chrnum.Po include ./$(DEPDIR)/gmap_sse41-chrom.Po include ./$(DEPDIR)/gmap_sse41-cmet.Po include ./$(DEPDIR)/gmap_sse41-compress-write.Po include ./$(DEPDIR)/gmap_sse41-compress.Po include ./$(DEPDIR)/gmap_sse41-datadir.Po include ./$(DEPDIR)/gmap_sse41-diag.Po include ./$(DEPDIR)/gmap_sse41-diagnostic.Po include ./$(DEPDIR)/gmap_sse41-diagpool.Po include ./$(DEPDIR)/gmap_sse41-doublelist.Po include ./$(DEPDIR)/gmap_sse41-dynprog.Po include ./$(DEPDIR)/gmap_sse41-dynprog_cdna.Po include ./$(DEPDIR)/gmap_sse41-dynprog_end.Po include ./$(DEPDIR)/gmap_sse41-dynprog_genome.Po include ./$(DEPDIR)/gmap_sse41-dynprog_simd.Po include ./$(DEPDIR)/gmap_sse41-dynprog_single.Po include ./$(DEPDIR)/gmap_sse41-epu16-bitpack64-read.Po include ./$(DEPDIR)/gmap_sse41-epu16-bitpack64-readtwo.Po include ./$(DEPDIR)/gmap_sse41-except.Po include ./$(DEPDIR)/gmap_sse41-filestring.Po include ./$(DEPDIR)/gmap_sse41-fopen.Po include ./$(DEPDIR)/gmap_sse41-gbuffer.Po include ./$(DEPDIR)/gmap_sse41-genome-write.Po include ./$(DEPDIR)/gmap_sse41-genome.Po include ./$(DEPDIR)/gmap_sse41-genome128_hr.Po include ./$(DEPDIR)/gmap_sse41-genome_sites.Po include ./$(DEPDIR)/gmap_sse41-genomicpos.Po include ./$(DEPDIR)/gmap_sse41-getline.Po include ./$(DEPDIR)/gmap_sse41-getopt.Po include ./$(DEPDIR)/gmap_sse41-getopt1.Po include ./$(DEPDIR)/gmap_sse41-gmap.Po include ./$(DEPDIR)/gmap_sse41-gregion.Po include ./$(DEPDIR)/gmap_sse41-iit-read-univ.Po include ./$(DEPDIR)/gmap_sse41-iit-read.Po include ./$(DEPDIR)/gmap_sse41-inbuffer.Po include ./$(DEPDIR)/gmap_sse41-indexdb.Po include ./$(DEPDIR)/gmap_sse41-interval.Po include ./$(DEPDIR)/gmap_sse41-intlist.Po include ./$(DEPDIR)/gmap_sse41-intron.Po include ./$(DEPDIR)/gmap_sse41-list.Po include ./$(DEPDIR)/gmap_sse41-littleendian.Po include ./$(DEPDIR)/gmap_sse41-match.Po include ./$(DEPDIR)/gmap_sse41-matchpool.Po include ./$(DEPDIR)/gmap_sse41-maxent.Po include ./$(DEPDIR)/gmap_sse41-maxent_hr.Po include ./$(DEPDIR)/gmap_sse41-md5.Po include ./$(DEPDIR)/gmap_sse41-mem.Po include ./$(DEPDIR)/gmap_sse41-oligo.Po include ./$(DEPDIR)/gmap_sse41-oligoindex_hr.Po include ./$(DEPDIR)/gmap_sse41-orderstat.Po include ./$(DEPDIR)/gmap_sse41-outbuffer.Po include ./$(DEPDIR)/gmap_sse41-output.Po include ./$(DEPDIR)/gmap_sse41-pair.Po include ./$(DEPDIR)/gmap_sse41-pairpool.Po include ./$(DEPDIR)/gmap_sse41-parserange.Po include ./$(DEPDIR)/gmap_sse41-pbinom.Po include ./$(DEPDIR)/gmap_sse41-popcount.Po include ./$(DEPDIR)/gmap_sse41-reader.Po include ./$(DEPDIR)/gmap_sse41-request.Po include ./$(DEPDIR)/gmap_sse41-result.Po include ./$(DEPDIR)/gmap_sse41-samheader.Po include ./$(DEPDIR)/gmap_sse41-segmentpos.Po include ./$(DEPDIR)/gmap_sse41-semaphore.Po include ./$(DEPDIR)/gmap_sse41-sequence.Po include ./$(DEPDIR)/gmap_sse41-smooth.Po include ./$(DEPDIR)/gmap_sse41-splicestringpool.Po include ./$(DEPDIR)/gmap_sse41-splicetrie.Po include ./$(DEPDIR)/gmap_sse41-splicetrie_build.Po include ./$(DEPDIR)/gmap_sse41-stage1.Po include ./$(DEPDIR)/gmap_sse41-stage2.Po include ./$(DEPDIR)/gmap_sse41-stage3.Po include ./$(DEPDIR)/gmap_sse41-stopwatch.Po include ./$(DEPDIR)/gmap_sse41-transcript.Po include ./$(DEPDIR)/gmap_sse41-translation.Po include ./$(DEPDIR)/gmap_sse41-uintlist.Po include ./$(DEPDIR)/gmap_sse41-uinttable.Po include ./$(DEPDIR)/gmap_sse41-univinterval.Po include ./$(DEPDIR)/gmap_sse42-access.Po include ./$(DEPDIR)/gmap_sse42-assert.Po include ./$(DEPDIR)/gmap_sse42-atoi.Po include ./$(DEPDIR)/gmap_sse42-bigendian.Po include ./$(DEPDIR)/gmap_sse42-bitpack64-read.Po include ./$(DEPDIR)/gmap_sse42-bitpack64-readtwo.Po include ./$(DEPDIR)/gmap_sse42-block.Po include ./$(DEPDIR)/gmap_sse42-boyer-moore.Po include ./$(DEPDIR)/gmap_sse42-bzip2.Po include ./$(DEPDIR)/gmap_sse42-cellpool.Po include ./$(DEPDIR)/gmap_sse42-changepoint.Po include ./$(DEPDIR)/gmap_sse42-chimera.Po include ./$(DEPDIR)/gmap_sse42-chrnum.Po include ./$(DEPDIR)/gmap_sse42-chrom.Po include ./$(DEPDIR)/gmap_sse42-cmet.Po include ./$(DEPDIR)/gmap_sse42-compress-write.Po include ./$(DEPDIR)/gmap_sse42-compress.Po include ./$(DEPDIR)/gmap_sse42-datadir.Po include ./$(DEPDIR)/gmap_sse42-diag.Po include ./$(DEPDIR)/gmap_sse42-diagnostic.Po include ./$(DEPDIR)/gmap_sse42-diagpool.Po include ./$(DEPDIR)/gmap_sse42-doublelist.Po include ./$(DEPDIR)/gmap_sse42-dynprog.Po include ./$(DEPDIR)/gmap_sse42-dynprog_cdna.Po include ./$(DEPDIR)/gmap_sse42-dynprog_end.Po include ./$(DEPDIR)/gmap_sse42-dynprog_genome.Po include ./$(DEPDIR)/gmap_sse42-dynprog_simd.Po include ./$(DEPDIR)/gmap_sse42-dynprog_single.Po include ./$(DEPDIR)/gmap_sse42-epu16-bitpack64-read.Po include ./$(DEPDIR)/gmap_sse42-epu16-bitpack64-readtwo.Po include ./$(DEPDIR)/gmap_sse42-except.Po include ./$(DEPDIR)/gmap_sse42-filestring.Po include ./$(DEPDIR)/gmap_sse42-fopen.Po include ./$(DEPDIR)/gmap_sse42-gbuffer.Po include ./$(DEPDIR)/gmap_sse42-genome-write.Po include ./$(DEPDIR)/gmap_sse42-genome.Po include ./$(DEPDIR)/gmap_sse42-genome128_hr.Po include ./$(DEPDIR)/gmap_sse42-genome_sites.Po include ./$(DEPDIR)/gmap_sse42-genomicpos.Po include ./$(DEPDIR)/gmap_sse42-getline.Po include ./$(DEPDIR)/gmap_sse42-getopt.Po include ./$(DEPDIR)/gmap_sse42-getopt1.Po include ./$(DEPDIR)/gmap_sse42-gmap.Po include ./$(DEPDIR)/gmap_sse42-gregion.Po include ./$(DEPDIR)/gmap_sse42-iit-read-univ.Po include ./$(DEPDIR)/gmap_sse42-iit-read.Po include ./$(DEPDIR)/gmap_sse42-inbuffer.Po include ./$(DEPDIR)/gmap_sse42-indexdb.Po include ./$(DEPDIR)/gmap_sse42-interval.Po include ./$(DEPDIR)/gmap_sse42-intlist.Po include ./$(DEPDIR)/gmap_sse42-intron.Po include ./$(DEPDIR)/gmap_sse42-list.Po include ./$(DEPDIR)/gmap_sse42-littleendian.Po include ./$(DEPDIR)/gmap_sse42-match.Po include ./$(DEPDIR)/gmap_sse42-matchpool.Po include ./$(DEPDIR)/gmap_sse42-maxent.Po include ./$(DEPDIR)/gmap_sse42-maxent_hr.Po include ./$(DEPDIR)/gmap_sse42-md5.Po include ./$(DEPDIR)/gmap_sse42-mem.Po include ./$(DEPDIR)/gmap_sse42-oligo.Po include ./$(DEPDIR)/gmap_sse42-oligoindex_hr.Po include ./$(DEPDIR)/gmap_sse42-orderstat.Po include ./$(DEPDIR)/gmap_sse42-outbuffer.Po include ./$(DEPDIR)/gmap_sse42-output.Po include ./$(DEPDIR)/gmap_sse42-pair.Po include ./$(DEPDIR)/gmap_sse42-pairpool.Po include ./$(DEPDIR)/gmap_sse42-parserange.Po include ./$(DEPDIR)/gmap_sse42-pbinom.Po include ./$(DEPDIR)/gmap_sse42-popcount.Po include ./$(DEPDIR)/gmap_sse42-reader.Po include ./$(DEPDIR)/gmap_sse42-request.Po include ./$(DEPDIR)/gmap_sse42-result.Po include ./$(DEPDIR)/gmap_sse42-samheader.Po include ./$(DEPDIR)/gmap_sse42-segmentpos.Po include ./$(DEPDIR)/gmap_sse42-semaphore.Po include ./$(DEPDIR)/gmap_sse42-sequence.Po include ./$(DEPDIR)/gmap_sse42-smooth.Po include ./$(DEPDIR)/gmap_sse42-splicestringpool.Po include ./$(DEPDIR)/gmap_sse42-splicetrie.Po include ./$(DEPDIR)/gmap_sse42-splicetrie_build.Po include ./$(DEPDIR)/gmap_sse42-stage1.Po include ./$(DEPDIR)/gmap_sse42-stage2.Po include ./$(DEPDIR)/gmap_sse42-stage3.Po include ./$(DEPDIR)/gmap_sse42-stopwatch.Po include ./$(DEPDIR)/gmap_sse42-transcript.Po include ./$(DEPDIR)/gmap_sse42-translation.Po include ./$(DEPDIR)/gmap_sse42-uintlist.Po include ./$(DEPDIR)/gmap_sse42-uinttable.Po include ./$(DEPDIR)/gmap_sse42-univinterval.Po include ./$(DEPDIR)/gmap_ssse3-access.Po include ./$(DEPDIR)/gmap_ssse3-assert.Po include ./$(DEPDIR)/gmap_ssse3-atoi.Po include ./$(DEPDIR)/gmap_ssse3-bigendian.Po include ./$(DEPDIR)/gmap_ssse3-bitpack64-read.Po include ./$(DEPDIR)/gmap_ssse3-bitpack64-readtwo.Po include ./$(DEPDIR)/gmap_ssse3-block.Po include ./$(DEPDIR)/gmap_ssse3-boyer-moore.Po include ./$(DEPDIR)/gmap_ssse3-bzip2.Po include ./$(DEPDIR)/gmap_ssse3-cellpool.Po include ./$(DEPDIR)/gmap_ssse3-changepoint.Po include ./$(DEPDIR)/gmap_ssse3-chimera.Po include ./$(DEPDIR)/gmap_ssse3-chrnum.Po include ./$(DEPDIR)/gmap_ssse3-chrom.Po include ./$(DEPDIR)/gmap_ssse3-cmet.Po include ./$(DEPDIR)/gmap_ssse3-compress-write.Po include ./$(DEPDIR)/gmap_ssse3-compress.Po include ./$(DEPDIR)/gmap_ssse3-datadir.Po include ./$(DEPDIR)/gmap_ssse3-diag.Po include ./$(DEPDIR)/gmap_ssse3-diagnostic.Po include ./$(DEPDIR)/gmap_ssse3-diagpool.Po include ./$(DEPDIR)/gmap_ssse3-doublelist.Po include ./$(DEPDIR)/gmap_ssse3-dynprog.Po include ./$(DEPDIR)/gmap_ssse3-dynprog_cdna.Po include ./$(DEPDIR)/gmap_ssse3-dynprog_end.Po include ./$(DEPDIR)/gmap_ssse3-dynprog_genome.Po include ./$(DEPDIR)/gmap_ssse3-dynprog_simd.Po include ./$(DEPDIR)/gmap_ssse3-dynprog_single.Po include ./$(DEPDIR)/gmap_ssse3-epu16-bitpack64-read.Po include ./$(DEPDIR)/gmap_ssse3-epu16-bitpack64-readtwo.Po include ./$(DEPDIR)/gmap_ssse3-except.Po include ./$(DEPDIR)/gmap_ssse3-filestring.Po include 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./$(DEPDIR)/gmap_ssse3-maxent.Po include ./$(DEPDIR)/gmap_ssse3-maxent_hr.Po include ./$(DEPDIR)/gmap_ssse3-md5.Po include ./$(DEPDIR)/gmap_ssse3-mem.Po include ./$(DEPDIR)/gmap_ssse3-oligo.Po include ./$(DEPDIR)/gmap_ssse3-oligoindex_hr.Po include ./$(DEPDIR)/gmap_ssse3-orderstat.Po include ./$(DEPDIR)/gmap_ssse3-outbuffer.Po include ./$(DEPDIR)/gmap_ssse3-output.Po include ./$(DEPDIR)/gmap_ssse3-pair.Po include ./$(DEPDIR)/gmap_ssse3-pairpool.Po include ./$(DEPDIR)/gmap_ssse3-parserange.Po include ./$(DEPDIR)/gmap_ssse3-pbinom.Po include ./$(DEPDIR)/gmap_ssse3-popcount.Po include ./$(DEPDIR)/gmap_ssse3-reader.Po include ./$(DEPDIR)/gmap_ssse3-request.Po include ./$(DEPDIR)/gmap_ssse3-result.Po include ./$(DEPDIR)/gmap_ssse3-samheader.Po include ./$(DEPDIR)/gmap_ssse3-segmentpos.Po include ./$(DEPDIR)/gmap_ssse3-semaphore.Po include ./$(DEPDIR)/gmap_ssse3-sequence.Po include ./$(DEPDIR)/gmap_ssse3-smooth.Po include ./$(DEPDIR)/gmap_ssse3-splicestringpool.Po include 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include ./$(DEPDIR)/gmapl_avx2-samheader.Po include ./$(DEPDIR)/gmapl_avx2-segmentpos.Po include ./$(DEPDIR)/gmapl_avx2-semaphore.Po include ./$(DEPDIR)/gmapl_avx2-sequence.Po include ./$(DEPDIR)/gmapl_avx2-smooth.Po include ./$(DEPDIR)/gmapl_avx2-splicestringpool.Po include ./$(DEPDIR)/gmapl_avx2-splicetrie.Po include ./$(DEPDIR)/gmapl_avx2-splicetrie_build.Po include ./$(DEPDIR)/gmapl_avx2-stage1.Po include ./$(DEPDIR)/gmapl_avx2-stage2.Po include ./$(DEPDIR)/gmapl_avx2-stage3.Po include ./$(DEPDIR)/gmapl_avx2-stopwatch.Po include ./$(DEPDIR)/gmapl_avx2-transcript.Po include ./$(DEPDIR)/gmapl_avx2-translation.Po include ./$(DEPDIR)/gmapl_avx2-uint8list.Po include ./$(DEPDIR)/gmapl_avx2-uintlist.Po include ./$(DEPDIR)/gmapl_avx2-uinttable.Po include ./$(DEPDIR)/gmapl_avx2-univinterval.Po include ./$(DEPDIR)/gmapl_avx512-access.Po include ./$(DEPDIR)/gmapl_avx512-assert.Po include ./$(DEPDIR)/gmapl_avx512-atoi.Po include ./$(DEPDIR)/gmapl_avx512-bigendian.Po include 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./$(DEPDIR)/gmapl_sse2-iit-read-univ.Po include ./$(DEPDIR)/gmapl_sse2-iit-read.Po include ./$(DEPDIR)/gmapl_sse2-inbuffer.Po include ./$(DEPDIR)/gmapl_sse2-indexdb.Po include ./$(DEPDIR)/gmapl_sse2-interval.Po include ./$(DEPDIR)/gmapl_sse2-intlist.Po include ./$(DEPDIR)/gmapl_sse2-intron.Po include ./$(DEPDIR)/gmapl_sse2-list.Po include ./$(DEPDIR)/gmapl_sse2-littleendian.Po include ./$(DEPDIR)/gmapl_sse2-match.Po include ./$(DEPDIR)/gmapl_sse2-matchpool.Po include ./$(DEPDIR)/gmapl_sse2-maxent.Po include ./$(DEPDIR)/gmapl_sse2-maxent_hr.Po include ./$(DEPDIR)/gmapl_sse2-md5.Po include ./$(DEPDIR)/gmapl_sse2-mem.Po include ./$(DEPDIR)/gmapl_sse2-oligo.Po include ./$(DEPDIR)/gmapl_sse2-oligoindex_hr.Po include ./$(DEPDIR)/gmapl_sse2-orderstat.Po include ./$(DEPDIR)/gmapl_sse2-outbuffer.Po include ./$(DEPDIR)/gmapl_sse2-output.Po include ./$(DEPDIR)/gmapl_sse2-pair.Po include ./$(DEPDIR)/gmapl_sse2-pairpool.Po include ./$(DEPDIR)/gmapl_sse2-parserange.Po include ./$(DEPDIR)/gmapl_sse2-pbinom.Po include ./$(DEPDIR)/gmapl_sse2-popcount.Po include ./$(DEPDIR)/gmapl_sse2-reader.Po include ./$(DEPDIR)/gmapl_sse2-request.Po include ./$(DEPDIR)/gmapl_sse2-result.Po include ./$(DEPDIR)/gmapl_sse2-samheader.Po include ./$(DEPDIR)/gmapl_sse2-segmentpos.Po include ./$(DEPDIR)/gmapl_sse2-semaphore.Po include ./$(DEPDIR)/gmapl_sse2-sequence.Po include ./$(DEPDIR)/gmapl_sse2-smooth.Po include ./$(DEPDIR)/gmapl_sse2-splicestringpool.Po include ./$(DEPDIR)/gmapl_sse2-splicetrie.Po include ./$(DEPDIR)/gmapl_sse2-splicetrie_build.Po include ./$(DEPDIR)/gmapl_sse2-stage1.Po include ./$(DEPDIR)/gmapl_sse2-stage2.Po include ./$(DEPDIR)/gmapl_sse2-stage3.Po include ./$(DEPDIR)/gmapl_sse2-stopwatch.Po include ./$(DEPDIR)/gmapl_sse2-transcript.Po include ./$(DEPDIR)/gmapl_sse2-translation.Po include ./$(DEPDIR)/gmapl_sse2-uint8list.Po include ./$(DEPDIR)/gmapl_sse2-uintlist.Po include ./$(DEPDIR)/gmapl_sse2-uinttable.Po include ./$(DEPDIR)/gmapl_sse2-univinterval.Po include ./$(DEPDIR)/gmapl_sse41-access.Po include ./$(DEPDIR)/gmapl_sse41-assert.Po include ./$(DEPDIR)/gmapl_sse41-atoi.Po include ./$(DEPDIR)/gmapl_sse41-bigendian.Po include ./$(DEPDIR)/gmapl_sse41-bitpack64-read.Po include ./$(DEPDIR)/gmapl_sse41-bitpack64-readtwo.Po include ./$(DEPDIR)/gmapl_sse41-block.Po include ./$(DEPDIR)/gmapl_sse41-boyer-moore.Po include ./$(DEPDIR)/gmapl_sse41-bzip2.Po include ./$(DEPDIR)/gmapl_sse41-cellpool.Po include ./$(DEPDIR)/gmapl_sse41-changepoint.Po include ./$(DEPDIR)/gmapl_sse41-chimera.Po include ./$(DEPDIR)/gmapl_sse41-chrnum.Po include ./$(DEPDIR)/gmapl_sse41-chrom.Po include ./$(DEPDIR)/gmapl_sse41-cmet.Po include ./$(DEPDIR)/gmapl_sse41-compress-write.Po include ./$(DEPDIR)/gmapl_sse41-compress.Po include ./$(DEPDIR)/gmapl_sse41-datadir.Po include ./$(DEPDIR)/gmapl_sse41-diag.Po include ./$(DEPDIR)/gmapl_sse41-diagnostic.Po include ./$(DEPDIR)/gmapl_sse41-diagpool.Po include ./$(DEPDIR)/gmapl_sse41-doublelist.Po include ./$(DEPDIR)/gmapl_sse41-dynprog.Po include ./$(DEPDIR)/gmapl_sse41-dynprog_cdna.Po include ./$(DEPDIR)/gmapl_sse41-dynprog_end.Po include ./$(DEPDIR)/gmapl_sse41-dynprog_genome.Po include ./$(DEPDIR)/gmapl_sse41-dynprog_simd.Po include ./$(DEPDIR)/gmapl_sse41-dynprog_single.Po include ./$(DEPDIR)/gmapl_sse41-epu16-bitpack64-read.Po include ./$(DEPDIR)/gmapl_sse41-epu16-bitpack64-readtwo.Po include ./$(DEPDIR)/gmapl_sse41-except.Po include ./$(DEPDIR)/gmapl_sse41-filestring.Po include ./$(DEPDIR)/gmapl_sse41-fopen.Po include ./$(DEPDIR)/gmapl_sse41-gbuffer.Po include ./$(DEPDIR)/gmapl_sse41-genome-write.Po include ./$(DEPDIR)/gmapl_sse41-genome.Po include ./$(DEPDIR)/gmapl_sse41-genome128_hr.Po include ./$(DEPDIR)/gmapl_sse41-genome_sites.Po include ./$(DEPDIR)/gmapl_sse41-genomicpos.Po include ./$(DEPDIR)/gmapl_sse41-getline.Po include ./$(DEPDIR)/gmapl_sse41-getopt.Po include ./$(DEPDIR)/gmapl_sse41-getopt1.Po include ./$(DEPDIR)/gmapl_sse41-gmap.Po include ./$(DEPDIR)/gmapl_sse41-gregion.Po include ./$(DEPDIR)/gmapl_sse41-iit-read-univ.Po include ./$(DEPDIR)/gmapl_sse41-iit-read.Po include ./$(DEPDIR)/gmapl_sse41-inbuffer.Po include ./$(DEPDIR)/gmapl_sse41-indexdb.Po include ./$(DEPDIR)/gmapl_sse41-interval.Po include ./$(DEPDIR)/gmapl_sse41-intlist.Po include ./$(DEPDIR)/gmapl_sse41-intron.Po include ./$(DEPDIR)/gmapl_sse41-list.Po include ./$(DEPDIR)/gmapl_sse41-littleendian.Po include ./$(DEPDIR)/gmapl_sse41-match.Po include ./$(DEPDIR)/gmapl_sse41-matchpool.Po include ./$(DEPDIR)/gmapl_sse41-maxent.Po include ./$(DEPDIR)/gmapl_sse41-maxent_hr.Po include ./$(DEPDIR)/gmapl_sse41-md5.Po include ./$(DEPDIR)/gmapl_sse41-mem.Po include ./$(DEPDIR)/gmapl_sse41-oligo.Po include ./$(DEPDIR)/gmapl_sse41-oligoindex_hr.Po include ./$(DEPDIR)/gmapl_sse41-orderstat.Po include ./$(DEPDIR)/gmapl_sse41-outbuffer.Po include ./$(DEPDIR)/gmapl_sse41-output.Po include ./$(DEPDIR)/gmapl_sse41-pair.Po include ./$(DEPDIR)/gmapl_sse41-pairpool.Po include ./$(DEPDIR)/gmapl_sse41-parserange.Po include ./$(DEPDIR)/gmapl_sse41-pbinom.Po include ./$(DEPDIR)/gmapl_sse41-popcount.Po include ./$(DEPDIR)/gmapl_sse41-reader.Po include ./$(DEPDIR)/gmapl_sse41-request.Po include ./$(DEPDIR)/gmapl_sse41-result.Po include ./$(DEPDIR)/gmapl_sse41-samheader.Po include ./$(DEPDIR)/gmapl_sse41-segmentpos.Po include ./$(DEPDIR)/gmapl_sse41-semaphore.Po include ./$(DEPDIR)/gmapl_sse41-sequence.Po include ./$(DEPDIR)/gmapl_sse41-smooth.Po include ./$(DEPDIR)/gmapl_sse41-splicestringpool.Po include ./$(DEPDIR)/gmapl_sse41-splicetrie.Po include ./$(DEPDIR)/gmapl_sse41-splicetrie_build.Po include ./$(DEPDIR)/gmapl_sse41-stage1.Po include ./$(DEPDIR)/gmapl_sse41-stage2.Po include ./$(DEPDIR)/gmapl_sse41-stage3.Po include ./$(DEPDIR)/gmapl_sse41-stopwatch.Po include ./$(DEPDIR)/gmapl_sse41-transcript.Po include ./$(DEPDIR)/gmapl_sse41-translation.Po include ./$(DEPDIR)/gmapl_sse41-uint8list.Po include ./$(DEPDIR)/gmapl_sse41-uintlist.Po include ./$(DEPDIR)/gmapl_sse41-uinttable.Po include ./$(DEPDIR)/gmapl_sse41-univinterval.Po include ./$(DEPDIR)/gmapl_sse42-access.Po include ./$(DEPDIR)/gmapl_sse42-assert.Po include ./$(DEPDIR)/gmapl_sse42-atoi.Po include ./$(DEPDIR)/gmapl_sse42-bigendian.Po include ./$(DEPDIR)/gmapl_sse42-bitpack64-read.Po include ./$(DEPDIR)/gmapl_sse42-bitpack64-readtwo.Po include ./$(DEPDIR)/gmapl_sse42-block.Po include ./$(DEPDIR)/gmapl_sse42-boyer-moore.Po include ./$(DEPDIR)/gmapl_sse42-bzip2.Po include ./$(DEPDIR)/gmapl_sse42-cellpool.Po include ./$(DEPDIR)/gmapl_sse42-changepoint.Po include ./$(DEPDIR)/gmapl_sse42-chimera.Po include ./$(DEPDIR)/gmapl_sse42-chrnum.Po include ./$(DEPDIR)/gmapl_sse42-chrom.Po include ./$(DEPDIR)/gmapl_sse42-cmet.Po include ./$(DEPDIR)/gmapl_sse42-compress-write.Po include ./$(DEPDIR)/gmapl_sse42-compress.Po include ./$(DEPDIR)/gmapl_sse42-datadir.Po include ./$(DEPDIR)/gmapl_sse42-diag.Po include ./$(DEPDIR)/gmapl_sse42-diagnostic.Po include ./$(DEPDIR)/gmapl_sse42-diagpool.Po include ./$(DEPDIR)/gmapl_sse42-doublelist.Po include ./$(DEPDIR)/gmapl_sse42-dynprog.Po include ./$(DEPDIR)/gmapl_sse42-dynprog_cdna.Po include ./$(DEPDIR)/gmapl_sse42-dynprog_end.Po include ./$(DEPDIR)/gmapl_sse42-dynprog_genome.Po include ./$(DEPDIR)/gmapl_sse42-dynprog_simd.Po include ./$(DEPDIR)/gmapl_sse42-dynprog_single.Po include ./$(DEPDIR)/gmapl_sse42-epu16-bitpack64-read.Po include ./$(DEPDIR)/gmapl_sse42-epu16-bitpack64-readtwo.Po include ./$(DEPDIR)/gmapl_sse42-except.Po include ./$(DEPDIR)/gmapl_sse42-filestring.Po include ./$(DEPDIR)/gmapl_sse42-fopen.Po include ./$(DEPDIR)/gmapl_sse42-gbuffer.Po include ./$(DEPDIR)/gmapl_sse42-genome-write.Po include ./$(DEPDIR)/gmapl_sse42-genome.Po include ./$(DEPDIR)/gmapl_sse42-genome128_hr.Po include ./$(DEPDIR)/gmapl_sse42-genome_sites.Po include ./$(DEPDIR)/gmapl_sse42-genomicpos.Po include ./$(DEPDIR)/gmapl_sse42-getline.Po include ./$(DEPDIR)/gmapl_sse42-getopt.Po include ./$(DEPDIR)/gmapl_sse42-getopt1.Po include ./$(DEPDIR)/gmapl_sse42-gmap.Po include ./$(DEPDIR)/gmapl_sse42-gregion.Po include ./$(DEPDIR)/gmapl_sse42-iit-read-univ.Po include ./$(DEPDIR)/gmapl_sse42-iit-read.Po include ./$(DEPDIR)/gmapl_sse42-inbuffer.Po include ./$(DEPDIR)/gmapl_sse42-indexdb.Po include ./$(DEPDIR)/gmapl_sse42-interval.Po include ./$(DEPDIR)/gmapl_sse42-intlist.Po include ./$(DEPDIR)/gmapl_sse42-intron.Po include ./$(DEPDIR)/gmapl_sse42-list.Po include ./$(DEPDIR)/gmapl_sse42-littleendian.Po include ./$(DEPDIR)/gmapl_sse42-match.Po include ./$(DEPDIR)/gmapl_sse42-matchpool.Po include ./$(DEPDIR)/gmapl_sse42-maxent.Po include ./$(DEPDIR)/gmapl_sse42-maxent_hr.Po include ./$(DEPDIR)/gmapl_sse42-md5.Po include ./$(DEPDIR)/gmapl_sse42-mem.Po include ./$(DEPDIR)/gmapl_sse42-oligo.Po include ./$(DEPDIR)/gmapl_sse42-oligoindex_hr.Po include ./$(DEPDIR)/gmapl_sse42-orderstat.Po include ./$(DEPDIR)/gmapl_sse42-outbuffer.Po include ./$(DEPDIR)/gmapl_sse42-output.Po include ./$(DEPDIR)/gmapl_sse42-pair.Po include ./$(DEPDIR)/gmapl_sse42-pairpool.Po include ./$(DEPDIR)/gmapl_sse42-parserange.Po include ./$(DEPDIR)/gmapl_sse42-pbinom.Po include ./$(DEPDIR)/gmapl_sse42-popcount.Po include ./$(DEPDIR)/gmapl_sse42-reader.Po include ./$(DEPDIR)/gmapl_sse42-request.Po include ./$(DEPDIR)/gmapl_sse42-result.Po include ./$(DEPDIR)/gmapl_sse42-samheader.Po include ./$(DEPDIR)/gmapl_sse42-segmentpos.Po include ./$(DEPDIR)/gmapl_sse42-semaphore.Po include ./$(DEPDIR)/gmapl_sse42-sequence.Po include ./$(DEPDIR)/gmapl_sse42-smooth.Po include ./$(DEPDIR)/gmapl_sse42-splicestringpool.Po include ./$(DEPDIR)/gmapl_sse42-splicetrie.Po include ./$(DEPDIR)/gmapl_sse42-splicetrie_build.Po include ./$(DEPDIR)/gmapl_sse42-stage1.Po include ./$(DEPDIR)/gmapl_sse42-stage2.Po include ./$(DEPDIR)/gmapl_sse42-stage3.Po include ./$(DEPDIR)/gmapl_sse42-stopwatch.Po include ./$(DEPDIR)/gmapl_sse42-transcript.Po include ./$(DEPDIR)/gmapl_sse42-translation.Po include ./$(DEPDIR)/gmapl_sse42-uint8list.Po include ./$(DEPDIR)/gmapl_sse42-uintlist.Po include ./$(DEPDIR)/gmapl_sse42-uinttable.Po include ./$(DEPDIR)/gmapl_sse42-univinterval.Po include ./$(DEPDIR)/gmapl_ssse3-access.Po include ./$(DEPDIR)/gmapl_ssse3-assert.Po include ./$(DEPDIR)/gmapl_ssse3-atoi.Po include ./$(DEPDIR)/gmapl_ssse3-bigendian.Po include ./$(DEPDIR)/gmapl_ssse3-bitpack64-read.Po include ./$(DEPDIR)/gmapl_ssse3-bitpack64-readtwo.Po include ./$(DEPDIR)/gmapl_ssse3-block.Po include ./$(DEPDIR)/gmapl_ssse3-boyer-moore.Po include ./$(DEPDIR)/gmapl_ssse3-bzip2.Po include ./$(DEPDIR)/gmapl_ssse3-cellpool.Po include ./$(DEPDIR)/gmapl_ssse3-changepoint.Po include ./$(DEPDIR)/gmapl_ssse3-chimera.Po include ./$(DEPDIR)/gmapl_ssse3-chrnum.Po include ./$(DEPDIR)/gmapl_ssse3-chrom.Po include ./$(DEPDIR)/gmapl_ssse3-cmet.Po include ./$(DEPDIR)/gmapl_ssse3-compress-write.Po include ./$(DEPDIR)/gmapl_ssse3-compress.Po include ./$(DEPDIR)/gmapl_ssse3-datadir.Po include ./$(DEPDIR)/gmapl_ssse3-diag.Po include ./$(DEPDIR)/gmapl_ssse3-diagnostic.Po include ./$(DEPDIR)/gmapl_ssse3-diagpool.Po include ./$(DEPDIR)/gmapl_ssse3-doublelist.Po include ./$(DEPDIR)/gmapl_ssse3-dynprog.Po include ./$(DEPDIR)/gmapl_ssse3-dynprog_cdna.Po include ./$(DEPDIR)/gmapl_ssse3-dynprog_end.Po include ./$(DEPDIR)/gmapl_ssse3-dynprog_genome.Po include ./$(DEPDIR)/gmapl_ssse3-dynprog_simd.Po include ./$(DEPDIR)/gmapl_ssse3-dynprog_single.Po include ./$(DEPDIR)/gmapl_ssse3-epu16-bitpack64-read.Po include ./$(DEPDIR)/gmapl_ssse3-epu16-bitpack64-readtwo.Po include ./$(DEPDIR)/gmapl_ssse3-except.Po include ./$(DEPDIR)/gmapl_ssse3-filestring.Po include ./$(DEPDIR)/gmapl_ssse3-fopen.Po include ./$(DEPDIR)/gmapl_ssse3-gbuffer.Po include ./$(DEPDIR)/gmapl_ssse3-genome-write.Po include ./$(DEPDIR)/gmapl_ssse3-genome.Po include ./$(DEPDIR)/gmapl_ssse3-genome128_hr.Po include ./$(DEPDIR)/gmapl_ssse3-genome_sites.Po include ./$(DEPDIR)/gmapl_ssse3-genomicpos.Po include ./$(DEPDIR)/gmapl_ssse3-getline.Po include ./$(DEPDIR)/gmapl_ssse3-getopt.Po include ./$(DEPDIR)/gmapl_ssse3-getopt1.Po include ./$(DEPDIR)/gmapl_ssse3-gmap.Po include ./$(DEPDIR)/gmapl_ssse3-gregion.Po include ./$(DEPDIR)/gmapl_ssse3-iit-read-univ.Po include ./$(DEPDIR)/gmapl_ssse3-iit-read.Po include ./$(DEPDIR)/gmapl_ssse3-inbuffer.Po include ./$(DEPDIR)/gmapl_ssse3-indexdb.Po include ./$(DEPDIR)/gmapl_ssse3-interval.Po include ./$(DEPDIR)/gmapl_ssse3-intlist.Po include ./$(DEPDIR)/gmapl_ssse3-intron.Po include ./$(DEPDIR)/gmapl_ssse3-list.Po include ./$(DEPDIR)/gmapl_ssse3-littleendian.Po include ./$(DEPDIR)/gmapl_ssse3-match.Po include ./$(DEPDIR)/gmapl_ssse3-matchpool.Po include ./$(DEPDIR)/gmapl_ssse3-maxent.Po include ./$(DEPDIR)/gmapl_ssse3-maxent_hr.Po include ./$(DEPDIR)/gmapl_ssse3-md5.Po include ./$(DEPDIR)/gmapl_ssse3-mem.Po include ./$(DEPDIR)/gmapl_ssse3-oligo.Po include ./$(DEPDIR)/gmapl_ssse3-oligoindex_hr.Po include ./$(DEPDIR)/gmapl_ssse3-orderstat.Po include ./$(DEPDIR)/gmapl_ssse3-outbuffer.Po include ./$(DEPDIR)/gmapl_ssse3-output.Po include ./$(DEPDIR)/gmapl_ssse3-pair.Po include ./$(DEPDIR)/gmapl_ssse3-pairpool.Po include ./$(DEPDIR)/gmapl_ssse3-parserange.Po include ./$(DEPDIR)/gmapl_ssse3-pbinom.Po include ./$(DEPDIR)/gmapl_ssse3-popcount.Po include ./$(DEPDIR)/gmapl_ssse3-reader.Po include ./$(DEPDIR)/gmapl_ssse3-request.Po include ./$(DEPDIR)/gmapl_ssse3-result.Po include ./$(DEPDIR)/gmapl_ssse3-samheader.Po include ./$(DEPDIR)/gmapl_ssse3-segmentpos.Po include ./$(DEPDIR)/gmapl_ssse3-semaphore.Po include ./$(DEPDIR)/gmapl_ssse3-sequence.Po include ./$(DEPDIR)/gmapl_ssse3-smooth.Po include ./$(DEPDIR)/gmapl_ssse3-splicestringpool.Po include ./$(DEPDIR)/gmapl_ssse3-splicetrie.Po include ./$(DEPDIR)/gmapl_ssse3-splicetrie_build.Po include ./$(DEPDIR)/gmapl_ssse3-stage1.Po include ./$(DEPDIR)/gmapl_ssse3-stage2.Po include ./$(DEPDIR)/gmapl_ssse3-stage3.Po include ./$(DEPDIR)/gmapl_ssse3-stopwatch.Po include ./$(DEPDIR)/gmapl_ssse3-transcript.Po include ./$(DEPDIR)/gmapl_ssse3-translation.Po include ./$(DEPDIR)/gmapl_ssse3-uint8list.Po include ./$(DEPDIR)/gmapl_ssse3-uintlist.Po include ./$(DEPDIR)/gmapl_ssse3-uinttable.Po include ./$(DEPDIR)/gmapl_ssse3-univinterval.Po include ./$(DEPDIR)/gsnap-cpuid.Po include ./$(DEPDIR)/gsnap-gsnap_select.Po include ./$(DEPDIR)/gsnap_avx2-access.Po include ./$(DEPDIR)/gsnap_avx2-assert.Po include ./$(DEPDIR)/gsnap_avx2-atoi.Po include ./$(DEPDIR)/gsnap_avx2-bigendian.Po include ./$(DEPDIR)/gsnap_avx2-bitpack64-access.Po include ./$(DEPDIR)/gsnap_avx2-bitpack64-read.Po include ./$(DEPDIR)/gsnap_avx2-bitpack64-readtwo.Po include ./$(DEPDIR)/gsnap_avx2-boyer-moore.Po include ./$(DEPDIR)/gsnap_avx2-bzip2.Po include ./$(DEPDIR)/gsnap_avx2-cellpool.Po include ./$(DEPDIR)/gsnap_avx2-changepoint.Po include ./$(DEPDIR)/gsnap_avx2-chimera.Po include ./$(DEPDIR)/gsnap_avx2-chrnum.Po include ./$(DEPDIR)/gsnap_avx2-chrom.Po include ./$(DEPDIR)/gsnap_avx2-cigar.Po include ./$(DEPDIR)/gsnap_avx2-cmet.Po include ./$(DEPDIR)/gsnap_avx2-compress.Po include ./$(DEPDIR)/gsnap_avx2-concordance.Po include ./$(DEPDIR)/gsnap_avx2-datadir.Po include ./$(DEPDIR)/gsnap_avx2-diag.Po include ./$(DEPDIR)/gsnap_avx2-diagpool.Po include ./$(DEPDIR)/gsnap_avx2-distant-rna.Po include ./$(DEPDIR)/gsnap_avx2-doublelist.Po include ./$(DEPDIR)/gsnap_avx2-dynprog.Po include ./$(DEPDIR)/gsnap_avx2-dynprog_cdna.Po include ./$(DEPDIR)/gsnap_avx2-dynprog_end.Po include ./$(DEPDIR)/gsnap_avx2-dynprog_genome.Po include ./$(DEPDIR)/gsnap_avx2-dynprog_simd.Po include ./$(DEPDIR)/gsnap_avx2-dynprog_single.Po include ./$(DEPDIR)/gsnap_avx2-epu16-bitpack64-read.Po include ./$(DEPDIR)/gsnap_avx2-epu16-bitpack64-readtwo.Po include ./$(DEPDIR)/gsnap_avx2-except.Po include ./$(DEPDIR)/gsnap_avx2-extension-search.Po include ./$(DEPDIR)/gsnap_avx2-filestring.Po include ./$(DEPDIR)/gsnap_avx2-fopen.Po include ./$(DEPDIR)/gsnap_avx2-gbuffer.Po include ./$(DEPDIR)/gsnap_avx2-genome.Po include ./$(DEPDIR)/gsnap_avx2-genome128_consec.Po include ./$(DEPDIR)/gsnap_avx2-genome128_hr.Po include ./$(DEPDIR)/gsnap_avx2-genome_sites.Po include ./$(DEPDIR)/gsnap_avx2-genomicpos.Po include ./$(DEPDIR)/gsnap_avx2-getline.Po include ./$(DEPDIR)/gsnap_avx2-getopt.Po include ./$(DEPDIR)/gsnap_avx2-getopt1.Po include ./$(DEPDIR)/gsnap_avx2-gsnap.Po include ./$(DEPDIR)/gsnap_avx2-iit-read-univ.Po include ./$(DEPDIR)/gsnap_avx2-iit-read.Po include ./$(DEPDIR)/gsnap_avx2-inbuffer.Po include ./$(DEPDIR)/gsnap_avx2-indel.Po include ./$(DEPDIR)/gsnap_avx2-indexdb.Po include ./$(DEPDIR)/gsnap_avx2-intersect.Po include ./$(DEPDIR)/gsnap_avx2-interval.Po include ./$(DEPDIR)/gsnap_avx2-intlist.Po include ./$(DEPDIR)/gsnap_avx2-intron.Po include ./$(DEPDIR)/gsnap_avx2-junction.Po include ./$(DEPDIR)/gsnap_avx2-kmer-search.Po include ./$(DEPDIR)/gsnap_avx2-ladder.Po include ./$(DEPDIR)/gsnap_avx2-list.Po include ./$(DEPDIR)/gsnap_avx2-littleendian.Po include ./$(DEPDIR)/gsnap_avx2-localdb.Po include ./$(DEPDIR)/gsnap_avx2-mapq.Po include ./$(DEPDIR)/gsnap_avx2-maxent.Po include ./$(DEPDIR)/gsnap_avx2-maxent_hr.Po include ./$(DEPDIR)/gsnap_avx2-md5.Po include ./$(DEPDIR)/gsnap_avx2-mem.Po include ./$(DEPDIR)/gsnap_avx2-merge-simd-diagonals.Po include ./$(DEPDIR)/gsnap_avx2-merge-simd-records.Po include ./$(DEPDIR)/gsnap_avx2-merge-uint4.Po include ./$(DEPDIR)/gsnap_avx2-method.Po include ./$(DEPDIR)/gsnap_avx2-oligo.Po include ./$(DEPDIR)/gsnap_avx2-oligoindex_hr.Po include ./$(DEPDIR)/gsnap_avx2-orderstat.Po include ./$(DEPDIR)/gsnap_avx2-outbuffer.Po include ./$(DEPDIR)/gsnap_avx2-output.Po include ./$(DEPDIR)/gsnap_avx2-pair.Po include ./$(DEPDIR)/gsnap_avx2-pairpool.Po include ./$(DEPDIR)/gsnap_avx2-parserange.Po include ./$(DEPDIR)/gsnap_avx2-path-solve.Po include ./$(DEPDIR)/gsnap_avx2-pbinom.Po include ./$(DEPDIR)/gsnap_avx2-popcount.Po include ./$(DEPDIR)/gsnap_avx2-reader.Po include ./$(DEPDIR)/gsnap_avx2-request.Po include ./$(DEPDIR)/gsnap_avx2-resulthr.Po include ./$(DEPDIR)/gsnap_avx2-samheader.Po include ./$(DEPDIR)/gsnap_avx2-samprint.Po include ./$(DEPDIR)/gsnap_avx2-sedgesort.Po include ./$(DEPDIR)/gsnap_avx2-segment-search.Po include ./$(DEPDIR)/gsnap_avx2-segmentpos.Po include ./$(DEPDIR)/gsnap_avx2-semaphore.Po include ./$(DEPDIR)/gsnap_avx2-sequence.Po include ./$(DEPDIR)/gsnap_avx2-shortread.Po include ./$(DEPDIR)/gsnap_avx2-smooth.Po include ./$(DEPDIR)/gsnap_avx2-splice.Po include ./$(DEPDIR)/gsnap_avx2-splicestringpool.Po include ./$(DEPDIR)/gsnap_avx2-splicetrie.Po include ./$(DEPDIR)/gsnap_avx2-splicetrie_build.Po include ./$(DEPDIR)/gsnap_avx2-stage1hr.Po include ./$(DEPDIR)/gsnap_avx2-stage2.Po include ./$(DEPDIR)/gsnap_avx2-stage3.Po include ./$(DEPDIR)/gsnap_avx2-stage3hr.Po include ./$(DEPDIR)/gsnap_avx2-stopwatch.Po include ./$(DEPDIR)/gsnap_avx2-substring.Po include ./$(DEPDIR)/gsnap_avx2-terminal.Po include ./$(DEPDIR)/gsnap_avx2-transcript.Po include ./$(DEPDIR)/gsnap_avx2-transcriptome.Po include ./$(DEPDIR)/gsnap_avx2-uint8table.Po include ./$(DEPDIR)/gsnap_avx2-uintlist.Po include ./$(DEPDIR)/gsnap_avx2-uinttable.Po include ./$(DEPDIR)/gsnap_avx2-univdiag.Po include ./$(DEPDIR)/gsnap_avx2-univinterval.Po include ./$(DEPDIR)/gsnap_avx512-access.Po include ./$(DEPDIR)/gsnap_avx512-assert.Po include ./$(DEPDIR)/gsnap_avx512-atoi.Po include ./$(DEPDIR)/gsnap_avx512-bigendian.Po include ./$(DEPDIR)/gsnap_avx512-bitpack64-access.Po include ./$(DEPDIR)/gsnap_avx512-bitpack64-read.Po include ./$(DEPDIR)/gsnap_avx512-bitpack64-readtwo.Po include ./$(DEPDIR)/gsnap_avx512-boyer-moore.Po include ./$(DEPDIR)/gsnap_avx512-bzip2.Po include ./$(DEPDIR)/gsnap_avx512-cellpool.Po include ./$(DEPDIR)/gsnap_avx512-changepoint.Po include ./$(DEPDIR)/gsnap_avx512-chimera.Po include ./$(DEPDIR)/gsnap_avx512-chrnum.Po include ./$(DEPDIR)/gsnap_avx512-chrom.Po include ./$(DEPDIR)/gsnap_avx512-cigar.Po include ./$(DEPDIR)/gsnap_avx512-cmet.Po include ./$(DEPDIR)/gsnap_avx512-compress.Po include ./$(DEPDIR)/gsnap_avx512-concordance.Po include ./$(DEPDIR)/gsnap_avx512-datadir.Po include ./$(DEPDIR)/gsnap_avx512-diag.Po include ./$(DEPDIR)/gsnap_avx512-diagpool.Po include ./$(DEPDIR)/gsnap_avx512-distant-rna.Po include ./$(DEPDIR)/gsnap_avx512-doublelist.Po include ./$(DEPDIR)/gsnap_avx512-dynprog.Po include ./$(DEPDIR)/gsnap_avx512-dynprog_cdna.Po include ./$(DEPDIR)/gsnap_avx512-dynprog_end.Po include ./$(DEPDIR)/gsnap_avx512-dynprog_genome.Po include ./$(DEPDIR)/gsnap_avx512-dynprog_simd.Po include ./$(DEPDIR)/gsnap_avx512-dynprog_single.Po include ./$(DEPDIR)/gsnap_avx512-epu16-bitpack64-read.Po include ./$(DEPDIR)/gsnap_avx512-epu16-bitpack64-readtwo.Po include ./$(DEPDIR)/gsnap_avx512-except.Po include ./$(DEPDIR)/gsnap_avx512-extension-search.Po include ./$(DEPDIR)/gsnap_avx512-filestring.Po include ./$(DEPDIR)/gsnap_avx512-fopen.Po include ./$(DEPDIR)/gsnap_avx512-gbuffer.Po include ./$(DEPDIR)/gsnap_avx512-genome.Po include ./$(DEPDIR)/gsnap_avx512-genome128_consec.Po include ./$(DEPDIR)/gsnap_avx512-genome128_hr.Po include ./$(DEPDIR)/gsnap_avx512-genome_sites.Po include ./$(DEPDIR)/gsnap_avx512-genomicpos.Po include ./$(DEPDIR)/gsnap_avx512-getline.Po include ./$(DEPDIR)/gsnap_avx512-getopt.Po include ./$(DEPDIR)/gsnap_avx512-getopt1.Po include ./$(DEPDIR)/gsnap_avx512-gsnap.Po include ./$(DEPDIR)/gsnap_avx512-iit-read-univ.Po include ./$(DEPDIR)/gsnap_avx512-iit-read.Po include ./$(DEPDIR)/gsnap_avx512-inbuffer.Po include ./$(DEPDIR)/gsnap_avx512-indel.Po include ./$(DEPDIR)/gsnap_avx512-indexdb.Po include ./$(DEPDIR)/gsnap_avx512-intersect.Po include ./$(DEPDIR)/gsnap_avx512-interval.Po include ./$(DEPDIR)/gsnap_avx512-intlist.Po include ./$(DEPDIR)/gsnap_avx512-intron.Po include ./$(DEPDIR)/gsnap_avx512-junction.Po include ./$(DEPDIR)/gsnap_avx512-kmer-search.Po include ./$(DEPDIR)/gsnap_avx512-ladder.Po include ./$(DEPDIR)/gsnap_avx512-list.Po include ./$(DEPDIR)/gsnap_avx512-littleendian.Po include ./$(DEPDIR)/gsnap_avx512-localdb.Po include ./$(DEPDIR)/gsnap_avx512-mapq.Po include ./$(DEPDIR)/gsnap_avx512-maxent.Po include ./$(DEPDIR)/gsnap_avx512-maxent_hr.Po include ./$(DEPDIR)/gsnap_avx512-md5.Po include ./$(DEPDIR)/gsnap_avx512-mem.Po include ./$(DEPDIR)/gsnap_avx512-merge-simd-diagonals.Po include ./$(DEPDIR)/gsnap_avx512-merge-simd-records.Po include ./$(DEPDIR)/gsnap_avx512-merge-uint4.Po include ./$(DEPDIR)/gsnap_avx512-method.Po include ./$(DEPDIR)/gsnap_avx512-oligo.Po include ./$(DEPDIR)/gsnap_avx512-oligoindex_hr.Po include ./$(DEPDIR)/gsnap_avx512-orderstat.Po include ./$(DEPDIR)/gsnap_avx512-outbuffer.Po include ./$(DEPDIR)/gsnap_avx512-output.Po include ./$(DEPDIR)/gsnap_avx512-pair.Po include ./$(DEPDIR)/gsnap_avx512-pairpool.Po include ./$(DEPDIR)/gsnap_avx512-parserange.Po include ./$(DEPDIR)/gsnap_avx512-path-solve.Po include ./$(DEPDIR)/gsnap_avx512-pbinom.Po include ./$(DEPDIR)/gsnap_avx512-popcount.Po include ./$(DEPDIR)/gsnap_avx512-reader.Po include ./$(DEPDIR)/gsnap_avx512-request.Po include ./$(DEPDIR)/gsnap_avx512-resulthr.Po include ./$(DEPDIR)/gsnap_avx512-samheader.Po include ./$(DEPDIR)/gsnap_avx512-samprint.Po include ./$(DEPDIR)/gsnap_avx512-sedgesort.Po include ./$(DEPDIR)/gsnap_avx512-segment-search.Po include ./$(DEPDIR)/gsnap_avx512-segmentpos.Po include ./$(DEPDIR)/gsnap_avx512-semaphore.Po include ./$(DEPDIR)/gsnap_avx512-sequence.Po include ./$(DEPDIR)/gsnap_avx512-shortread.Po include ./$(DEPDIR)/gsnap_avx512-smooth.Po include ./$(DEPDIR)/gsnap_avx512-splice.Po include ./$(DEPDIR)/gsnap_avx512-splicestringpool.Po include ./$(DEPDIR)/gsnap_avx512-splicetrie.Po include ./$(DEPDIR)/gsnap_avx512-splicetrie_build.Po include ./$(DEPDIR)/gsnap_avx512-stage1hr.Po include ./$(DEPDIR)/gsnap_avx512-stage2.Po include ./$(DEPDIR)/gsnap_avx512-stage3.Po include ./$(DEPDIR)/gsnap_avx512-stage3hr.Po include ./$(DEPDIR)/gsnap_avx512-stopwatch.Po include ./$(DEPDIR)/gsnap_avx512-substring.Po include ./$(DEPDIR)/gsnap_avx512-terminal.Po include ./$(DEPDIR)/gsnap_avx512-transcript.Po include ./$(DEPDIR)/gsnap_avx512-transcriptome.Po include ./$(DEPDIR)/gsnap_avx512-uint8table.Po include ./$(DEPDIR)/gsnap_avx512-uintlist.Po include ./$(DEPDIR)/gsnap_avx512-uinttable.Po include ./$(DEPDIR)/gsnap_avx512-univdiag.Po include ./$(DEPDIR)/gsnap_avx512-univinterval.Po include ./$(DEPDIR)/gsnap_sse2-access.Po include ./$(DEPDIR)/gsnap_sse2-assert.Po include ./$(DEPDIR)/gsnap_sse2-atoi.Po include ./$(DEPDIR)/gsnap_sse2-bigendian.Po include ./$(DEPDIR)/gsnap_sse2-bitpack64-access.Po include ./$(DEPDIR)/gsnap_sse2-bitpack64-read.Po include ./$(DEPDIR)/gsnap_sse2-bitpack64-readtwo.Po include ./$(DEPDIR)/gsnap_sse2-boyer-moore.Po include ./$(DEPDIR)/gsnap_sse2-bzip2.Po include ./$(DEPDIR)/gsnap_sse2-cellpool.Po include ./$(DEPDIR)/gsnap_sse2-changepoint.Po include ./$(DEPDIR)/gsnap_sse2-chimera.Po include ./$(DEPDIR)/gsnap_sse2-chrnum.Po include ./$(DEPDIR)/gsnap_sse2-chrom.Po include ./$(DEPDIR)/gsnap_sse2-cigar.Po include ./$(DEPDIR)/gsnap_sse2-cmet.Po include ./$(DEPDIR)/gsnap_sse2-compress.Po include ./$(DEPDIR)/gsnap_sse2-concordance.Po include ./$(DEPDIR)/gsnap_sse2-datadir.Po include ./$(DEPDIR)/gsnap_sse2-diag.Po include ./$(DEPDIR)/gsnap_sse2-diagpool.Po include ./$(DEPDIR)/gsnap_sse2-distant-rna.Po include ./$(DEPDIR)/gsnap_sse2-doublelist.Po include ./$(DEPDIR)/gsnap_sse2-dynprog.Po include ./$(DEPDIR)/gsnap_sse2-dynprog_cdna.Po include ./$(DEPDIR)/gsnap_sse2-dynprog_end.Po include ./$(DEPDIR)/gsnap_sse2-dynprog_genome.Po include ./$(DEPDIR)/gsnap_sse2-dynprog_simd.Po include ./$(DEPDIR)/gsnap_sse2-dynprog_single.Po include ./$(DEPDIR)/gsnap_sse2-epu16-bitpack64-read.Po include ./$(DEPDIR)/gsnap_sse2-epu16-bitpack64-readtwo.Po include ./$(DEPDIR)/gsnap_sse2-except.Po include ./$(DEPDIR)/gsnap_sse2-extension-search.Po include ./$(DEPDIR)/gsnap_sse2-filestring.Po include ./$(DEPDIR)/gsnap_sse2-fopen.Po include ./$(DEPDIR)/gsnap_sse2-gbuffer.Po include ./$(DEPDIR)/gsnap_sse2-genome.Po include ./$(DEPDIR)/gsnap_sse2-genome128_consec.Po include ./$(DEPDIR)/gsnap_sse2-genome128_hr.Po include ./$(DEPDIR)/gsnap_sse2-genome_sites.Po include ./$(DEPDIR)/gsnap_sse2-genomicpos.Po include ./$(DEPDIR)/gsnap_sse2-getline.Po include ./$(DEPDIR)/gsnap_sse2-getopt.Po include ./$(DEPDIR)/gsnap_sse2-getopt1.Po include ./$(DEPDIR)/gsnap_sse2-gsnap.Po include ./$(DEPDIR)/gsnap_sse2-iit-read-univ.Po include ./$(DEPDIR)/gsnap_sse2-iit-read.Po include ./$(DEPDIR)/gsnap_sse2-inbuffer.Po include ./$(DEPDIR)/gsnap_sse2-indel.Po include ./$(DEPDIR)/gsnap_sse2-indexdb.Po include ./$(DEPDIR)/gsnap_sse2-intersect.Po include ./$(DEPDIR)/gsnap_sse2-interval.Po include ./$(DEPDIR)/gsnap_sse2-intlist.Po include ./$(DEPDIR)/gsnap_sse2-intron.Po include ./$(DEPDIR)/gsnap_sse2-junction.Po include ./$(DEPDIR)/gsnap_sse2-kmer-search.Po include ./$(DEPDIR)/gsnap_sse2-ladder.Po include ./$(DEPDIR)/gsnap_sse2-list.Po include ./$(DEPDIR)/gsnap_sse2-littleendian.Po include ./$(DEPDIR)/gsnap_sse2-localdb.Po include ./$(DEPDIR)/gsnap_sse2-mapq.Po include ./$(DEPDIR)/gsnap_sse2-maxent.Po include ./$(DEPDIR)/gsnap_sse2-maxent_hr.Po include ./$(DEPDIR)/gsnap_sse2-md5.Po include ./$(DEPDIR)/gsnap_sse2-mem.Po include ./$(DEPDIR)/gsnap_sse2-merge-simd-diagonals.Po include ./$(DEPDIR)/gsnap_sse2-merge-simd-records.Po include ./$(DEPDIR)/gsnap_sse2-merge-uint4.Po include ./$(DEPDIR)/gsnap_sse2-method.Po include ./$(DEPDIR)/gsnap_sse2-oligo.Po include ./$(DEPDIR)/gsnap_sse2-oligoindex_hr.Po include ./$(DEPDIR)/gsnap_sse2-orderstat.Po include ./$(DEPDIR)/gsnap_sse2-outbuffer.Po include ./$(DEPDIR)/gsnap_sse2-output.Po include ./$(DEPDIR)/gsnap_sse2-pair.Po include ./$(DEPDIR)/gsnap_sse2-pairpool.Po include ./$(DEPDIR)/gsnap_sse2-parserange.Po include ./$(DEPDIR)/gsnap_sse2-path-solve.Po include ./$(DEPDIR)/gsnap_sse2-pbinom.Po include ./$(DEPDIR)/gsnap_sse2-popcount.Po include ./$(DEPDIR)/gsnap_sse2-reader.Po include ./$(DEPDIR)/gsnap_sse2-request.Po include ./$(DEPDIR)/gsnap_sse2-resulthr.Po include ./$(DEPDIR)/gsnap_sse2-samheader.Po include ./$(DEPDIR)/gsnap_sse2-samprint.Po include ./$(DEPDIR)/gsnap_sse2-sedgesort.Po include ./$(DEPDIR)/gsnap_sse2-segment-search.Po include ./$(DEPDIR)/gsnap_sse2-segmentpos.Po include ./$(DEPDIR)/gsnap_sse2-semaphore.Po include ./$(DEPDIR)/gsnap_sse2-sequence.Po include ./$(DEPDIR)/gsnap_sse2-shortread.Po include ./$(DEPDIR)/gsnap_sse2-smooth.Po include ./$(DEPDIR)/gsnap_sse2-splice.Po include ./$(DEPDIR)/gsnap_sse2-splicestringpool.Po include ./$(DEPDIR)/gsnap_sse2-splicetrie.Po include ./$(DEPDIR)/gsnap_sse2-splicetrie_build.Po include ./$(DEPDIR)/gsnap_sse2-stage1hr.Po include ./$(DEPDIR)/gsnap_sse2-stage2.Po include ./$(DEPDIR)/gsnap_sse2-stage3.Po include ./$(DEPDIR)/gsnap_sse2-stage3hr.Po include ./$(DEPDIR)/gsnap_sse2-stopwatch.Po include ./$(DEPDIR)/gsnap_sse2-substring.Po include ./$(DEPDIR)/gsnap_sse2-terminal.Po include ./$(DEPDIR)/gsnap_sse2-transcript.Po include ./$(DEPDIR)/gsnap_sse2-transcriptome.Po include ./$(DEPDIR)/gsnap_sse2-uint8table.Po include ./$(DEPDIR)/gsnap_sse2-uintlist.Po include ./$(DEPDIR)/gsnap_sse2-uinttable.Po include ./$(DEPDIR)/gsnap_sse2-univdiag.Po include ./$(DEPDIR)/gsnap_sse2-univinterval.Po include ./$(DEPDIR)/gsnap_sse41-access.Po include ./$(DEPDIR)/gsnap_sse41-assert.Po include ./$(DEPDIR)/gsnap_sse41-atoi.Po include ./$(DEPDIR)/gsnap_sse41-bigendian.Po include ./$(DEPDIR)/gsnap_sse41-bitpack64-access.Po include ./$(DEPDIR)/gsnap_sse41-bitpack64-read.Po include ./$(DEPDIR)/gsnap_sse41-bitpack64-readtwo.Po include ./$(DEPDIR)/gsnap_sse41-boyer-moore.Po include ./$(DEPDIR)/gsnap_sse41-bzip2.Po include ./$(DEPDIR)/gsnap_sse41-cellpool.Po include ./$(DEPDIR)/gsnap_sse41-changepoint.Po include ./$(DEPDIR)/gsnap_sse41-chimera.Po include ./$(DEPDIR)/gsnap_sse41-chrnum.Po include ./$(DEPDIR)/gsnap_sse41-chrom.Po include ./$(DEPDIR)/gsnap_sse41-cigar.Po include ./$(DEPDIR)/gsnap_sse41-cmet.Po include ./$(DEPDIR)/gsnap_sse41-compress.Po include ./$(DEPDIR)/gsnap_sse41-concordance.Po include ./$(DEPDIR)/gsnap_sse41-datadir.Po include ./$(DEPDIR)/gsnap_sse41-diag.Po include ./$(DEPDIR)/gsnap_sse41-diagpool.Po include ./$(DEPDIR)/gsnap_sse41-distant-rna.Po include ./$(DEPDIR)/gsnap_sse41-doublelist.Po include ./$(DEPDIR)/gsnap_sse41-dynprog.Po include ./$(DEPDIR)/gsnap_sse41-dynprog_cdna.Po include ./$(DEPDIR)/gsnap_sse41-dynprog_end.Po include ./$(DEPDIR)/gsnap_sse41-dynprog_genome.Po include ./$(DEPDIR)/gsnap_sse41-dynprog_simd.Po include ./$(DEPDIR)/gsnap_sse41-dynprog_single.Po include ./$(DEPDIR)/gsnap_sse41-epu16-bitpack64-read.Po include ./$(DEPDIR)/gsnap_sse41-epu16-bitpack64-readtwo.Po include ./$(DEPDIR)/gsnap_sse41-except.Po include ./$(DEPDIR)/gsnap_sse41-extension-search.Po include ./$(DEPDIR)/gsnap_sse41-filestring.Po include ./$(DEPDIR)/gsnap_sse41-fopen.Po include ./$(DEPDIR)/gsnap_sse41-gbuffer.Po include ./$(DEPDIR)/gsnap_sse41-genome.Po include ./$(DEPDIR)/gsnap_sse41-genome128_consec.Po include ./$(DEPDIR)/gsnap_sse41-genome128_hr.Po include ./$(DEPDIR)/gsnap_sse41-genome_sites.Po include ./$(DEPDIR)/gsnap_sse41-genomicpos.Po include ./$(DEPDIR)/gsnap_sse41-getline.Po include ./$(DEPDIR)/gsnap_sse41-getopt.Po include ./$(DEPDIR)/gsnap_sse41-getopt1.Po include ./$(DEPDIR)/gsnap_sse41-gsnap.Po include ./$(DEPDIR)/gsnap_sse41-iit-read-univ.Po include ./$(DEPDIR)/gsnap_sse41-iit-read.Po include ./$(DEPDIR)/gsnap_sse41-inbuffer.Po include ./$(DEPDIR)/gsnap_sse41-indel.Po include ./$(DEPDIR)/gsnap_sse41-indexdb.Po include ./$(DEPDIR)/gsnap_sse41-intersect.Po include ./$(DEPDIR)/gsnap_sse41-interval.Po include ./$(DEPDIR)/gsnap_sse41-intlist.Po include ./$(DEPDIR)/gsnap_sse41-intron.Po include ./$(DEPDIR)/gsnap_sse41-junction.Po include ./$(DEPDIR)/gsnap_sse41-kmer-search.Po include ./$(DEPDIR)/gsnap_sse41-ladder.Po include ./$(DEPDIR)/gsnap_sse41-list.Po include ./$(DEPDIR)/gsnap_sse41-littleendian.Po include ./$(DEPDIR)/gsnap_sse41-localdb.Po include ./$(DEPDIR)/gsnap_sse41-mapq.Po include ./$(DEPDIR)/gsnap_sse41-maxent.Po include ./$(DEPDIR)/gsnap_sse41-maxent_hr.Po include ./$(DEPDIR)/gsnap_sse41-md5.Po include ./$(DEPDIR)/gsnap_sse41-mem.Po include ./$(DEPDIR)/gsnap_sse41-merge-simd-diagonals.Po include ./$(DEPDIR)/gsnap_sse41-merge-simd-records.Po include ./$(DEPDIR)/gsnap_sse41-merge-uint4.Po include ./$(DEPDIR)/gsnap_sse41-method.Po include ./$(DEPDIR)/gsnap_sse41-oligo.Po include ./$(DEPDIR)/gsnap_sse41-oligoindex_hr.Po include ./$(DEPDIR)/gsnap_sse41-orderstat.Po include ./$(DEPDIR)/gsnap_sse41-outbuffer.Po include ./$(DEPDIR)/gsnap_sse41-output.Po include ./$(DEPDIR)/gsnap_sse41-pair.Po include ./$(DEPDIR)/gsnap_sse41-pairpool.Po include ./$(DEPDIR)/gsnap_sse41-parserange.Po include ./$(DEPDIR)/gsnap_sse41-path-solve.Po include ./$(DEPDIR)/gsnap_sse41-pbinom.Po include ./$(DEPDIR)/gsnap_sse41-popcount.Po include ./$(DEPDIR)/gsnap_sse41-reader.Po include ./$(DEPDIR)/gsnap_sse41-request.Po include ./$(DEPDIR)/gsnap_sse41-resulthr.Po include ./$(DEPDIR)/gsnap_sse41-samheader.Po include ./$(DEPDIR)/gsnap_sse41-samprint.Po include ./$(DEPDIR)/gsnap_sse41-sedgesort.Po include ./$(DEPDIR)/gsnap_sse41-segment-search.Po include ./$(DEPDIR)/gsnap_sse41-segmentpos.Po include ./$(DEPDIR)/gsnap_sse41-semaphore.Po include ./$(DEPDIR)/gsnap_sse41-sequence.Po include ./$(DEPDIR)/gsnap_sse41-shortread.Po include ./$(DEPDIR)/gsnap_sse41-smooth.Po include ./$(DEPDIR)/gsnap_sse41-splice.Po include ./$(DEPDIR)/gsnap_sse41-splicestringpool.Po include ./$(DEPDIR)/gsnap_sse41-splicetrie.Po include ./$(DEPDIR)/gsnap_sse41-splicetrie_build.Po include ./$(DEPDIR)/gsnap_sse41-stage1hr.Po include ./$(DEPDIR)/gsnap_sse41-stage2.Po include ./$(DEPDIR)/gsnap_sse41-stage3.Po include ./$(DEPDIR)/gsnap_sse41-stage3hr.Po include ./$(DEPDIR)/gsnap_sse41-stopwatch.Po include ./$(DEPDIR)/gsnap_sse41-substring.Po include ./$(DEPDIR)/gsnap_sse41-terminal.Po include ./$(DEPDIR)/gsnap_sse41-transcript.Po include ./$(DEPDIR)/gsnap_sse41-transcriptome.Po include ./$(DEPDIR)/gsnap_sse41-uint8table.Po include ./$(DEPDIR)/gsnap_sse41-uintlist.Po include ./$(DEPDIR)/gsnap_sse41-uinttable.Po include ./$(DEPDIR)/gsnap_sse41-univdiag.Po include ./$(DEPDIR)/gsnap_sse41-univinterval.Po include ./$(DEPDIR)/gsnap_sse42-access.Po include ./$(DEPDIR)/gsnap_sse42-assert.Po include ./$(DEPDIR)/gsnap_sse42-atoi.Po include ./$(DEPDIR)/gsnap_sse42-bigendian.Po include ./$(DEPDIR)/gsnap_sse42-bitpack64-access.Po include ./$(DEPDIR)/gsnap_sse42-bitpack64-read.Po include ./$(DEPDIR)/gsnap_sse42-bitpack64-readtwo.Po include ./$(DEPDIR)/gsnap_sse42-boyer-moore.Po include ./$(DEPDIR)/gsnap_sse42-bzip2.Po include ./$(DEPDIR)/gsnap_sse42-cellpool.Po include ./$(DEPDIR)/gsnap_sse42-changepoint.Po include ./$(DEPDIR)/gsnap_sse42-chimera.Po include ./$(DEPDIR)/gsnap_sse42-chrnum.Po include ./$(DEPDIR)/gsnap_sse42-chrom.Po include ./$(DEPDIR)/gsnap_sse42-cigar.Po include ./$(DEPDIR)/gsnap_sse42-cmet.Po include ./$(DEPDIR)/gsnap_sse42-compress.Po include ./$(DEPDIR)/gsnap_sse42-concordance.Po include ./$(DEPDIR)/gsnap_sse42-datadir.Po include ./$(DEPDIR)/gsnap_sse42-diag.Po include ./$(DEPDIR)/gsnap_sse42-diagpool.Po include ./$(DEPDIR)/gsnap_sse42-distant-rna.Po include ./$(DEPDIR)/gsnap_sse42-doublelist.Po include ./$(DEPDIR)/gsnap_sse42-dynprog.Po include ./$(DEPDIR)/gsnap_sse42-dynprog_cdna.Po include ./$(DEPDIR)/gsnap_sse42-dynprog_end.Po include ./$(DEPDIR)/gsnap_sse42-dynprog_genome.Po include ./$(DEPDIR)/gsnap_sse42-dynprog_simd.Po include ./$(DEPDIR)/gsnap_sse42-dynprog_single.Po include ./$(DEPDIR)/gsnap_sse42-epu16-bitpack64-read.Po include ./$(DEPDIR)/gsnap_sse42-epu16-bitpack64-readtwo.Po include ./$(DEPDIR)/gsnap_sse42-except.Po include ./$(DEPDIR)/gsnap_sse42-extension-search.Po include ./$(DEPDIR)/gsnap_sse42-filestring.Po include ./$(DEPDIR)/gsnap_sse42-fopen.Po include ./$(DEPDIR)/gsnap_sse42-gbuffer.Po include ./$(DEPDIR)/gsnap_sse42-genome.Po include ./$(DEPDIR)/gsnap_sse42-genome128_consec.Po include ./$(DEPDIR)/gsnap_sse42-genome128_hr.Po include ./$(DEPDIR)/gsnap_sse42-genome_sites.Po include ./$(DEPDIR)/gsnap_sse42-genomicpos.Po include ./$(DEPDIR)/gsnap_sse42-getline.Po include ./$(DEPDIR)/gsnap_sse42-getopt.Po include ./$(DEPDIR)/gsnap_sse42-getopt1.Po include ./$(DEPDIR)/gsnap_sse42-gsnap.Po include ./$(DEPDIR)/gsnap_sse42-iit-read-univ.Po include ./$(DEPDIR)/gsnap_sse42-iit-read.Po include ./$(DEPDIR)/gsnap_sse42-inbuffer.Po include ./$(DEPDIR)/gsnap_sse42-indel.Po include ./$(DEPDIR)/gsnap_sse42-indexdb.Po include ./$(DEPDIR)/gsnap_sse42-intersect.Po include ./$(DEPDIR)/gsnap_sse42-interval.Po include ./$(DEPDIR)/gsnap_sse42-intlist.Po include ./$(DEPDIR)/gsnap_sse42-intron.Po include ./$(DEPDIR)/gsnap_sse42-junction.Po include ./$(DEPDIR)/gsnap_sse42-kmer-search.Po include ./$(DEPDIR)/gsnap_sse42-ladder.Po include ./$(DEPDIR)/gsnap_sse42-list.Po include ./$(DEPDIR)/gsnap_sse42-littleendian.Po include ./$(DEPDIR)/gsnap_sse42-localdb.Po include ./$(DEPDIR)/gsnap_sse42-mapq.Po include ./$(DEPDIR)/gsnap_sse42-maxent.Po include ./$(DEPDIR)/gsnap_sse42-maxent_hr.Po include ./$(DEPDIR)/gsnap_sse42-md5.Po include ./$(DEPDIR)/gsnap_sse42-mem.Po include ./$(DEPDIR)/gsnap_sse42-merge-simd-diagonals.Po include ./$(DEPDIR)/gsnap_sse42-merge-simd-records.Po include ./$(DEPDIR)/gsnap_sse42-merge-uint4.Po include ./$(DEPDIR)/gsnap_sse42-method.Po include ./$(DEPDIR)/gsnap_sse42-oligo.Po include ./$(DEPDIR)/gsnap_sse42-oligoindex_hr.Po include ./$(DEPDIR)/gsnap_sse42-orderstat.Po include ./$(DEPDIR)/gsnap_sse42-outbuffer.Po include ./$(DEPDIR)/gsnap_sse42-output.Po include ./$(DEPDIR)/gsnap_sse42-pair.Po include ./$(DEPDIR)/gsnap_sse42-pairpool.Po include ./$(DEPDIR)/gsnap_sse42-parserange.Po include ./$(DEPDIR)/gsnap_sse42-path-solve.Po include ./$(DEPDIR)/gsnap_sse42-pbinom.Po include ./$(DEPDIR)/gsnap_sse42-popcount.Po include ./$(DEPDIR)/gsnap_sse42-reader.Po include ./$(DEPDIR)/gsnap_sse42-request.Po include ./$(DEPDIR)/gsnap_sse42-resulthr.Po include ./$(DEPDIR)/gsnap_sse42-samheader.Po include ./$(DEPDIR)/gsnap_sse42-samprint.Po include ./$(DEPDIR)/gsnap_sse42-sedgesort.Po include ./$(DEPDIR)/gsnap_sse42-segment-search.Po include ./$(DEPDIR)/gsnap_sse42-segmentpos.Po include ./$(DEPDIR)/gsnap_sse42-semaphore.Po include ./$(DEPDIR)/gsnap_sse42-sequence.Po include ./$(DEPDIR)/gsnap_sse42-shortread.Po include ./$(DEPDIR)/gsnap_sse42-smooth.Po include ./$(DEPDIR)/gsnap_sse42-splice.Po include ./$(DEPDIR)/gsnap_sse42-splicestringpool.Po include ./$(DEPDIR)/gsnap_sse42-splicetrie.Po include ./$(DEPDIR)/gsnap_sse42-splicetrie_build.Po include ./$(DEPDIR)/gsnap_sse42-stage1hr.Po include ./$(DEPDIR)/gsnap_sse42-stage2.Po include ./$(DEPDIR)/gsnap_sse42-stage3.Po include ./$(DEPDIR)/gsnap_sse42-stage3hr.Po include ./$(DEPDIR)/gsnap_sse42-stopwatch.Po include ./$(DEPDIR)/gsnap_sse42-substring.Po include ./$(DEPDIR)/gsnap_sse42-terminal.Po include ./$(DEPDIR)/gsnap_sse42-transcript.Po include ./$(DEPDIR)/gsnap_sse42-transcriptome.Po include ./$(DEPDIR)/gsnap_sse42-uint8table.Po include ./$(DEPDIR)/gsnap_sse42-uintlist.Po include ./$(DEPDIR)/gsnap_sse42-uinttable.Po include ./$(DEPDIR)/gsnap_sse42-univdiag.Po include ./$(DEPDIR)/gsnap_sse42-univinterval.Po include ./$(DEPDIR)/gsnap_ssse3-access.Po include ./$(DEPDIR)/gsnap_ssse3-assert.Po include ./$(DEPDIR)/gsnap_ssse3-atoi.Po include ./$(DEPDIR)/gsnap_ssse3-bigendian.Po include ./$(DEPDIR)/gsnap_ssse3-bitpack64-access.Po include ./$(DEPDIR)/gsnap_ssse3-bitpack64-read.Po include ./$(DEPDIR)/gsnap_ssse3-bitpack64-readtwo.Po include ./$(DEPDIR)/gsnap_ssse3-boyer-moore.Po include ./$(DEPDIR)/gsnap_ssse3-bzip2.Po include ./$(DEPDIR)/gsnap_ssse3-cellpool.Po include ./$(DEPDIR)/gsnap_ssse3-changepoint.Po include ./$(DEPDIR)/gsnap_ssse3-chimera.Po include ./$(DEPDIR)/gsnap_ssse3-chrnum.Po include ./$(DEPDIR)/gsnap_ssse3-chrom.Po include ./$(DEPDIR)/gsnap_ssse3-cigar.Po include ./$(DEPDIR)/gsnap_ssse3-cmet.Po include ./$(DEPDIR)/gsnap_ssse3-compress.Po include ./$(DEPDIR)/gsnap_ssse3-concordance.Po include ./$(DEPDIR)/gsnap_ssse3-datadir.Po include ./$(DEPDIR)/gsnap_ssse3-diag.Po include ./$(DEPDIR)/gsnap_ssse3-diagpool.Po include ./$(DEPDIR)/gsnap_ssse3-distant-rna.Po include ./$(DEPDIR)/gsnap_ssse3-doublelist.Po include ./$(DEPDIR)/gsnap_ssse3-dynprog.Po include ./$(DEPDIR)/gsnap_ssse3-dynprog_cdna.Po include ./$(DEPDIR)/gsnap_ssse3-dynprog_end.Po include ./$(DEPDIR)/gsnap_ssse3-dynprog_genome.Po include ./$(DEPDIR)/gsnap_ssse3-dynprog_simd.Po include ./$(DEPDIR)/gsnap_ssse3-dynprog_single.Po include ./$(DEPDIR)/gsnap_ssse3-epu16-bitpack64-read.Po include ./$(DEPDIR)/gsnap_ssse3-epu16-bitpack64-readtwo.Po include ./$(DEPDIR)/gsnap_ssse3-except.Po include ./$(DEPDIR)/gsnap_ssse3-extension-search.Po include ./$(DEPDIR)/gsnap_ssse3-filestring.Po include ./$(DEPDIR)/gsnap_ssse3-fopen.Po include ./$(DEPDIR)/gsnap_ssse3-gbuffer.Po include ./$(DEPDIR)/gsnap_ssse3-genome.Po include ./$(DEPDIR)/gsnap_ssse3-genome128_consec.Po include ./$(DEPDIR)/gsnap_ssse3-genome128_hr.Po include ./$(DEPDIR)/gsnap_ssse3-genome_sites.Po include ./$(DEPDIR)/gsnap_ssse3-genomicpos.Po include ./$(DEPDIR)/gsnap_ssse3-getline.Po include ./$(DEPDIR)/gsnap_ssse3-getopt.Po include ./$(DEPDIR)/gsnap_ssse3-getopt1.Po include ./$(DEPDIR)/gsnap_ssse3-gsnap.Po include ./$(DEPDIR)/gsnap_ssse3-iit-read-univ.Po include ./$(DEPDIR)/gsnap_ssse3-iit-read.Po include ./$(DEPDIR)/gsnap_ssse3-inbuffer.Po include ./$(DEPDIR)/gsnap_ssse3-indel.Po include ./$(DEPDIR)/gsnap_ssse3-indexdb.Po include ./$(DEPDIR)/gsnap_ssse3-intersect.Po include ./$(DEPDIR)/gsnap_ssse3-interval.Po include ./$(DEPDIR)/gsnap_ssse3-intlist.Po include ./$(DEPDIR)/gsnap_ssse3-intron.Po include ./$(DEPDIR)/gsnap_ssse3-junction.Po include ./$(DEPDIR)/gsnap_ssse3-kmer-search.Po include ./$(DEPDIR)/gsnap_ssse3-ladder.Po include ./$(DEPDIR)/gsnap_ssse3-list.Po include ./$(DEPDIR)/gsnap_ssse3-littleendian.Po include ./$(DEPDIR)/gsnap_ssse3-localdb.Po include ./$(DEPDIR)/gsnap_ssse3-mapq.Po include ./$(DEPDIR)/gsnap_ssse3-maxent.Po include ./$(DEPDIR)/gsnap_ssse3-maxent_hr.Po include ./$(DEPDIR)/gsnap_ssse3-md5.Po include ./$(DEPDIR)/gsnap_ssse3-mem.Po include ./$(DEPDIR)/gsnap_ssse3-merge-simd-diagonals.Po include ./$(DEPDIR)/gsnap_ssse3-merge-simd-records.Po include ./$(DEPDIR)/gsnap_ssse3-merge-uint4.Po include ./$(DEPDIR)/gsnap_ssse3-method.Po include ./$(DEPDIR)/gsnap_ssse3-oligo.Po include ./$(DEPDIR)/gsnap_ssse3-oligoindex_hr.Po include ./$(DEPDIR)/gsnap_ssse3-orderstat.Po include ./$(DEPDIR)/gsnap_ssse3-outbuffer.Po include ./$(DEPDIR)/gsnap_ssse3-output.Po include ./$(DEPDIR)/gsnap_ssse3-pair.Po include ./$(DEPDIR)/gsnap_ssse3-pairpool.Po include ./$(DEPDIR)/gsnap_ssse3-parserange.Po include ./$(DEPDIR)/gsnap_ssse3-path-solve.Po include ./$(DEPDIR)/gsnap_ssse3-pbinom.Po include ./$(DEPDIR)/gsnap_ssse3-popcount.Po include ./$(DEPDIR)/gsnap_ssse3-reader.Po include ./$(DEPDIR)/gsnap_ssse3-request.Po include ./$(DEPDIR)/gsnap_ssse3-resulthr.Po include ./$(DEPDIR)/gsnap_ssse3-samheader.Po include ./$(DEPDIR)/gsnap_ssse3-samprint.Po include ./$(DEPDIR)/gsnap_ssse3-sedgesort.Po include ./$(DEPDIR)/gsnap_ssse3-segment-search.Po include ./$(DEPDIR)/gsnap_ssse3-segmentpos.Po include ./$(DEPDIR)/gsnap_ssse3-semaphore.Po include ./$(DEPDIR)/gsnap_ssse3-sequence.Po include ./$(DEPDIR)/gsnap_ssse3-shortread.Po include ./$(DEPDIR)/gsnap_ssse3-smooth.Po include ./$(DEPDIR)/gsnap_ssse3-splice.Po include ./$(DEPDIR)/gsnap_ssse3-splicestringpool.Po include ./$(DEPDIR)/gsnap_ssse3-splicetrie.Po include ./$(DEPDIR)/gsnap_ssse3-splicetrie_build.Po include ./$(DEPDIR)/gsnap_ssse3-stage1hr.Po include ./$(DEPDIR)/gsnap_ssse3-stage2.Po include ./$(DEPDIR)/gsnap_ssse3-stage3.Po include ./$(DEPDIR)/gsnap_ssse3-stage3hr.Po include ./$(DEPDIR)/gsnap_ssse3-stopwatch.Po include ./$(DEPDIR)/gsnap_ssse3-substring.Po include ./$(DEPDIR)/gsnap_ssse3-terminal.Po include ./$(DEPDIR)/gsnap_ssse3-transcript.Po include ./$(DEPDIR)/gsnap_ssse3-transcriptome.Po include ./$(DEPDIR)/gsnap_ssse3-uint8table.Po include ./$(DEPDIR)/gsnap_ssse3-uintlist.Po include ./$(DEPDIR)/gsnap_ssse3-uinttable.Po include ./$(DEPDIR)/gsnap_ssse3-univdiag.Po include ./$(DEPDIR)/gsnap_ssse3-univinterval.Po include ./$(DEPDIR)/gsnapl-cpuid.Po include ./$(DEPDIR)/gsnapl-gsnapl_select.Po include ./$(DEPDIR)/gsnapl_avx2-access.Po include ./$(DEPDIR)/gsnapl_avx2-assert.Po include ./$(DEPDIR)/gsnapl_avx2-atoi.Po include ./$(DEPDIR)/gsnapl_avx2-bigendian.Po include ./$(DEPDIR)/gsnapl_avx2-bitpack64-access.Po include ./$(DEPDIR)/gsnapl_avx2-bitpack64-read.Po include ./$(DEPDIR)/gsnapl_avx2-bitpack64-readtwo.Po include ./$(DEPDIR)/gsnapl_avx2-boyer-moore.Po include ./$(DEPDIR)/gsnapl_avx2-bzip2.Po include ./$(DEPDIR)/gsnapl_avx2-cellpool.Po include ./$(DEPDIR)/gsnapl_avx2-changepoint.Po include ./$(DEPDIR)/gsnapl_avx2-chimera.Po include ./$(DEPDIR)/gsnapl_avx2-chrnum.Po include ./$(DEPDIR)/gsnapl_avx2-chrom.Po include ./$(DEPDIR)/gsnapl_avx2-cigar.Po include ./$(DEPDIR)/gsnapl_avx2-cmet.Po include ./$(DEPDIR)/gsnapl_avx2-compress.Po include ./$(DEPDIR)/gsnapl_avx2-concordance.Po include ./$(DEPDIR)/gsnapl_avx2-datadir.Po include ./$(DEPDIR)/gsnapl_avx2-diag.Po include ./$(DEPDIR)/gsnapl_avx2-diagpool.Po include ./$(DEPDIR)/gsnapl_avx2-distant-rna.Po include ./$(DEPDIR)/gsnapl_avx2-doublelist.Po include ./$(DEPDIR)/gsnapl_avx2-dynprog.Po include ./$(DEPDIR)/gsnapl_avx2-dynprog_cdna.Po include ./$(DEPDIR)/gsnapl_avx2-dynprog_end.Po include ./$(DEPDIR)/gsnapl_avx2-dynprog_genome.Po include ./$(DEPDIR)/gsnapl_avx2-dynprog_simd.Po include ./$(DEPDIR)/gsnapl_avx2-dynprog_single.Po include ./$(DEPDIR)/gsnapl_avx2-epu16-bitpack64-read.Po include ./$(DEPDIR)/gsnapl_avx2-epu16-bitpack64-readtwo.Po include ./$(DEPDIR)/gsnapl_avx2-except.Po include ./$(DEPDIR)/gsnapl_avx2-extension-search.Po include ./$(DEPDIR)/gsnapl_avx2-filestring.Po include ./$(DEPDIR)/gsnapl_avx2-fopen.Po include ./$(DEPDIR)/gsnapl_avx2-gbuffer.Po include ./$(DEPDIR)/gsnapl_avx2-genome.Po include ./$(DEPDIR)/gsnapl_avx2-genome128_consec.Po include ./$(DEPDIR)/gsnapl_avx2-genome128_hr.Po include ./$(DEPDIR)/gsnapl_avx2-genome_sites.Po include ./$(DEPDIR)/gsnapl_avx2-genomicpos.Po include ./$(DEPDIR)/gsnapl_avx2-getline.Po include ./$(DEPDIR)/gsnapl_avx2-getopt.Po include ./$(DEPDIR)/gsnapl_avx2-getopt1.Po include ./$(DEPDIR)/gsnapl_avx2-gsnap.Po include ./$(DEPDIR)/gsnapl_avx2-iit-read-univ.Po include ./$(DEPDIR)/gsnapl_avx2-iit-read.Po include ./$(DEPDIR)/gsnapl_avx2-inbuffer.Po include ./$(DEPDIR)/gsnapl_avx2-indel.Po include ./$(DEPDIR)/gsnapl_avx2-indexdb.Po include ./$(DEPDIR)/gsnapl_avx2-intersect.Po include ./$(DEPDIR)/gsnapl_avx2-interval.Po include ./$(DEPDIR)/gsnapl_avx2-intlist.Po include ./$(DEPDIR)/gsnapl_avx2-intron.Po include ./$(DEPDIR)/gsnapl_avx2-junction.Po include ./$(DEPDIR)/gsnapl_avx2-kmer-search.Po include ./$(DEPDIR)/gsnapl_avx2-ladder.Po include ./$(DEPDIR)/gsnapl_avx2-list.Po include ./$(DEPDIR)/gsnapl_avx2-littleendian.Po include ./$(DEPDIR)/gsnapl_avx2-localdb.Po include ./$(DEPDIR)/gsnapl_avx2-mapq.Po include ./$(DEPDIR)/gsnapl_avx2-maxent.Po include ./$(DEPDIR)/gsnapl_avx2-maxent_hr.Po include ./$(DEPDIR)/gsnapl_avx2-md5.Po include ./$(DEPDIR)/gsnapl_avx2-mem.Po include ./$(DEPDIR)/gsnapl_avx2-merge-heap-diagonals.Po include ./$(DEPDIR)/gsnapl_avx2-merge-heap-records.Po include ./$(DEPDIR)/gsnapl_avx2-merge-simd-diagonals.Po include ./$(DEPDIR)/gsnapl_avx2-merge-uint4.Po include ./$(DEPDIR)/gsnapl_avx2-method.Po include ./$(DEPDIR)/gsnapl_avx2-oligo.Po include ./$(DEPDIR)/gsnapl_avx2-oligoindex_hr.Po include ./$(DEPDIR)/gsnapl_avx2-orderstat.Po include ./$(DEPDIR)/gsnapl_avx2-outbuffer.Po include ./$(DEPDIR)/gsnapl_avx2-output.Po include ./$(DEPDIR)/gsnapl_avx2-pair.Po include ./$(DEPDIR)/gsnapl_avx2-pairpool.Po include ./$(DEPDIR)/gsnapl_avx2-parserange.Po include ./$(DEPDIR)/gsnapl_avx2-path-solve.Po include ./$(DEPDIR)/gsnapl_avx2-pbinom.Po include ./$(DEPDIR)/gsnapl_avx2-popcount.Po include ./$(DEPDIR)/gsnapl_avx2-reader.Po include ./$(DEPDIR)/gsnapl_avx2-request.Po include ./$(DEPDIR)/gsnapl_avx2-resulthr.Po include ./$(DEPDIR)/gsnapl_avx2-samheader.Po include ./$(DEPDIR)/gsnapl_avx2-samprint.Po include ./$(DEPDIR)/gsnapl_avx2-sedgesort.Po include ./$(DEPDIR)/gsnapl_avx2-segment-search.Po include ./$(DEPDIR)/gsnapl_avx2-segmentpos.Po include ./$(DEPDIR)/gsnapl_avx2-semaphore.Po include ./$(DEPDIR)/gsnapl_avx2-sequence.Po include ./$(DEPDIR)/gsnapl_avx2-shortread.Po include ./$(DEPDIR)/gsnapl_avx2-smooth.Po include ./$(DEPDIR)/gsnapl_avx2-splice.Po include ./$(DEPDIR)/gsnapl_avx2-splicestringpool.Po include ./$(DEPDIR)/gsnapl_avx2-splicetrie.Po include ./$(DEPDIR)/gsnapl_avx2-splicetrie_build.Po include ./$(DEPDIR)/gsnapl_avx2-stage1hr.Po include ./$(DEPDIR)/gsnapl_avx2-stage2.Po include ./$(DEPDIR)/gsnapl_avx2-stage3.Po include ./$(DEPDIR)/gsnapl_avx2-stage3hr.Po include ./$(DEPDIR)/gsnapl_avx2-stopwatch.Po include ./$(DEPDIR)/gsnapl_avx2-substring.Po include ./$(DEPDIR)/gsnapl_avx2-terminal.Po include ./$(DEPDIR)/gsnapl_avx2-transcript.Po include ./$(DEPDIR)/gsnapl_avx2-transcriptome.Po include ./$(DEPDIR)/gsnapl_avx2-uint8list.Po include ./$(DEPDIR)/gsnapl_avx2-uint8table.Po include ./$(DEPDIR)/gsnapl_avx2-uintlist.Po include ./$(DEPDIR)/gsnapl_avx2-uinttable.Po include ./$(DEPDIR)/gsnapl_avx2-univdiag.Po include ./$(DEPDIR)/gsnapl_avx2-univinterval.Po include ./$(DEPDIR)/gsnapl_avx512-access.Po include ./$(DEPDIR)/gsnapl_avx512-assert.Po include ./$(DEPDIR)/gsnapl_avx512-atoi.Po include ./$(DEPDIR)/gsnapl_avx512-bigendian.Po include ./$(DEPDIR)/gsnapl_avx512-bitpack64-access.Po include ./$(DEPDIR)/gsnapl_avx512-bitpack64-read.Po include ./$(DEPDIR)/gsnapl_avx512-bitpack64-readtwo.Po include ./$(DEPDIR)/gsnapl_avx512-boyer-moore.Po include ./$(DEPDIR)/gsnapl_avx512-bzip2.Po include ./$(DEPDIR)/gsnapl_avx512-cellpool.Po include ./$(DEPDIR)/gsnapl_avx512-changepoint.Po include ./$(DEPDIR)/gsnapl_avx512-chimera.Po include ./$(DEPDIR)/gsnapl_avx512-chrnum.Po include ./$(DEPDIR)/gsnapl_avx512-chrom.Po include ./$(DEPDIR)/gsnapl_avx512-cigar.Po include ./$(DEPDIR)/gsnapl_avx512-cmet.Po include ./$(DEPDIR)/gsnapl_avx512-compress.Po include ./$(DEPDIR)/gsnapl_avx512-concordance.Po include ./$(DEPDIR)/gsnapl_avx512-datadir.Po include ./$(DEPDIR)/gsnapl_avx512-diag.Po include ./$(DEPDIR)/gsnapl_avx512-diagpool.Po include ./$(DEPDIR)/gsnapl_avx512-distant-rna.Po include ./$(DEPDIR)/gsnapl_avx512-doublelist.Po include ./$(DEPDIR)/gsnapl_avx512-dynprog.Po include ./$(DEPDIR)/gsnapl_avx512-dynprog_cdna.Po include ./$(DEPDIR)/gsnapl_avx512-dynprog_end.Po include ./$(DEPDIR)/gsnapl_avx512-dynprog_genome.Po include ./$(DEPDIR)/gsnapl_avx512-dynprog_simd.Po include ./$(DEPDIR)/gsnapl_avx512-dynprog_single.Po include ./$(DEPDIR)/gsnapl_avx512-epu16-bitpack64-read.Po include ./$(DEPDIR)/gsnapl_avx512-epu16-bitpack64-readtwo.Po include ./$(DEPDIR)/gsnapl_avx512-except.Po include ./$(DEPDIR)/gsnapl_avx512-extension-search.Po include ./$(DEPDIR)/gsnapl_avx512-filestring.Po include ./$(DEPDIR)/gsnapl_avx512-fopen.Po include ./$(DEPDIR)/gsnapl_avx512-gbuffer.Po include ./$(DEPDIR)/gsnapl_avx512-genome.Po include ./$(DEPDIR)/gsnapl_avx512-genome128_consec.Po include ./$(DEPDIR)/gsnapl_avx512-genome128_hr.Po include ./$(DEPDIR)/gsnapl_avx512-genome_sites.Po include ./$(DEPDIR)/gsnapl_avx512-genomicpos.Po include ./$(DEPDIR)/gsnapl_avx512-getline.Po include ./$(DEPDIR)/gsnapl_avx512-getopt.Po include ./$(DEPDIR)/gsnapl_avx512-getopt1.Po include ./$(DEPDIR)/gsnapl_avx512-gsnap.Po include ./$(DEPDIR)/gsnapl_avx512-iit-read-univ.Po include ./$(DEPDIR)/gsnapl_avx512-iit-read.Po include ./$(DEPDIR)/gsnapl_avx512-inbuffer.Po include ./$(DEPDIR)/gsnapl_avx512-indel.Po include ./$(DEPDIR)/gsnapl_avx512-indexdb.Po include ./$(DEPDIR)/gsnapl_avx512-intersect.Po include ./$(DEPDIR)/gsnapl_avx512-interval.Po include ./$(DEPDIR)/gsnapl_avx512-intlist.Po include ./$(DEPDIR)/gsnapl_avx512-intron.Po include ./$(DEPDIR)/gsnapl_avx512-junction.Po include ./$(DEPDIR)/gsnapl_avx512-kmer-search.Po include ./$(DEPDIR)/gsnapl_avx512-ladder.Po include ./$(DEPDIR)/gsnapl_avx512-list.Po include ./$(DEPDIR)/gsnapl_avx512-littleendian.Po include ./$(DEPDIR)/gsnapl_avx512-localdb.Po include ./$(DEPDIR)/gsnapl_avx512-mapq.Po include ./$(DEPDIR)/gsnapl_avx512-maxent.Po include ./$(DEPDIR)/gsnapl_avx512-maxent_hr.Po include ./$(DEPDIR)/gsnapl_avx512-md5.Po include ./$(DEPDIR)/gsnapl_avx512-mem.Po include ./$(DEPDIR)/gsnapl_avx512-merge-heap-diagonals.Po include ./$(DEPDIR)/gsnapl_avx512-merge-heap-records.Po include ./$(DEPDIR)/gsnapl_avx512-merge-simd-diagonals.Po include ./$(DEPDIR)/gsnapl_avx512-merge-uint4.Po include ./$(DEPDIR)/gsnapl_avx512-method.Po include ./$(DEPDIR)/gsnapl_avx512-oligo.Po include ./$(DEPDIR)/gsnapl_avx512-oligoindex_hr.Po include ./$(DEPDIR)/gsnapl_avx512-orderstat.Po include ./$(DEPDIR)/gsnapl_avx512-outbuffer.Po include ./$(DEPDIR)/gsnapl_avx512-output.Po include ./$(DEPDIR)/gsnapl_avx512-pair.Po include ./$(DEPDIR)/gsnapl_avx512-pairpool.Po include ./$(DEPDIR)/gsnapl_avx512-parserange.Po include ./$(DEPDIR)/gsnapl_avx512-path-solve.Po include ./$(DEPDIR)/gsnapl_avx512-pbinom.Po include ./$(DEPDIR)/gsnapl_avx512-popcount.Po include ./$(DEPDIR)/gsnapl_avx512-reader.Po include ./$(DEPDIR)/gsnapl_avx512-request.Po include ./$(DEPDIR)/gsnapl_avx512-resulthr.Po include ./$(DEPDIR)/gsnapl_avx512-samheader.Po include ./$(DEPDIR)/gsnapl_avx512-samprint.Po include ./$(DEPDIR)/gsnapl_avx512-sedgesort.Po include ./$(DEPDIR)/gsnapl_avx512-segment-search.Po include ./$(DEPDIR)/gsnapl_avx512-segmentpos.Po include ./$(DEPDIR)/gsnapl_avx512-semaphore.Po include ./$(DEPDIR)/gsnapl_avx512-sequence.Po include ./$(DEPDIR)/gsnapl_avx512-shortread.Po include ./$(DEPDIR)/gsnapl_avx512-smooth.Po include ./$(DEPDIR)/gsnapl_avx512-splice.Po include ./$(DEPDIR)/gsnapl_avx512-splicestringpool.Po include ./$(DEPDIR)/gsnapl_avx512-splicetrie.Po include ./$(DEPDIR)/gsnapl_avx512-splicetrie_build.Po include ./$(DEPDIR)/gsnapl_avx512-stage1hr.Po include ./$(DEPDIR)/gsnapl_avx512-stage2.Po include ./$(DEPDIR)/gsnapl_avx512-stage3.Po include ./$(DEPDIR)/gsnapl_avx512-stage3hr.Po include ./$(DEPDIR)/gsnapl_avx512-stopwatch.Po include ./$(DEPDIR)/gsnapl_avx512-substring.Po include ./$(DEPDIR)/gsnapl_avx512-terminal.Po include ./$(DEPDIR)/gsnapl_avx512-transcript.Po include ./$(DEPDIR)/gsnapl_avx512-transcriptome.Po include ./$(DEPDIR)/gsnapl_avx512-uint8list.Po include ./$(DEPDIR)/gsnapl_avx512-uint8table.Po include ./$(DEPDIR)/gsnapl_avx512-uintlist.Po include ./$(DEPDIR)/gsnapl_avx512-uinttable.Po include ./$(DEPDIR)/gsnapl_avx512-univdiag.Po include ./$(DEPDIR)/gsnapl_avx512-univinterval.Po include ./$(DEPDIR)/gsnapl_sse2-access.Po include ./$(DEPDIR)/gsnapl_sse2-assert.Po include ./$(DEPDIR)/gsnapl_sse2-atoi.Po include ./$(DEPDIR)/gsnapl_sse2-bigendian.Po include ./$(DEPDIR)/gsnapl_sse2-bitpack64-access.Po include ./$(DEPDIR)/gsnapl_sse2-bitpack64-read.Po include ./$(DEPDIR)/gsnapl_sse2-bitpack64-readtwo.Po include ./$(DEPDIR)/gsnapl_sse2-boyer-moore.Po include ./$(DEPDIR)/gsnapl_sse2-bzip2.Po include ./$(DEPDIR)/gsnapl_sse2-cellpool.Po include ./$(DEPDIR)/gsnapl_sse2-changepoint.Po include ./$(DEPDIR)/gsnapl_sse2-chimera.Po include ./$(DEPDIR)/gsnapl_sse2-chrnum.Po include ./$(DEPDIR)/gsnapl_sse2-chrom.Po include ./$(DEPDIR)/gsnapl_sse2-cigar.Po include ./$(DEPDIR)/gsnapl_sse2-cmet.Po include ./$(DEPDIR)/gsnapl_sse2-compress.Po include ./$(DEPDIR)/gsnapl_sse2-concordance.Po include ./$(DEPDIR)/gsnapl_sse2-datadir.Po include ./$(DEPDIR)/gsnapl_sse2-diag.Po include ./$(DEPDIR)/gsnapl_sse2-diagpool.Po include ./$(DEPDIR)/gsnapl_sse2-distant-rna.Po include ./$(DEPDIR)/gsnapl_sse2-doublelist.Po include ./$(DEPDIR)/gsnapl_sse2-dynprog.Po include ./$(DEPDIR)/gsnapl_sse2-dynprog_cdna.Po include ./$(DEPDIR)/gsnapl_sse2-dynprog_end.Po include ./$(DEPDIR)/gsnapl_sse2-dynprog_genome.Po include ./$(DEPDIR)/gsnapl_sse2-dynprog_simd.Po include ./$(DEPDIR)/gsnapl_sse2-dynprog_single.Po include ./$(DEPDIR)/gsnapl_sse2-epu16-bitpack64-read.Po include ./$(DEPDIR)/gsnapl_sse2-epu16-bitpack64-readtwo.Po include ./$(DEPDIR)/gsnapl_sse2-except.Po include ./$(DEPDIR)/gsnapl_sse2-extension-search.Po include ./$(DEPDIR)/gsnapl_sse2-filestring.Po include ./$(DEPDIR)/gsnapl_sse2-fopen.Po include ./$(DEPDIR)/gsnapl_sse2-gbuffer.Po include ./$(DEPDIR)/gsnapl_sse2-genome.Po include ./$(DEPDIR)/gsnapl_sse2-genome128_consec.Po include ./$(DEPDIR)/gsnapl_sse2-genome128_hr.Po include ./$(DEPDIR)/gsnapl_sse2-genome_sites.Po include ./$(DEPDIR)/gsnapl_sse2-genomicpos.Po include ./$(DEPDIR)/gsnapl_sse2-getline.Po include ./$(DEPDIR)/gsnapl_sse2-getopt.Po include ./$(DEPDIR)/gsnapl_sse2-getopt1.Po include ./$(DEPDIR)/gsnapl_sse2-gsnap.Po include ./$(DEPDIR)/gsnapl_sse2-iit-read-univ.Po include ./$(DEPDIR)/gsnapl_sse2-iit-read.Po include ./$(DEPDIR)/gsnapl_sse2-inbuffer.Po include ./$(DEPDIR)/gsnapl_sse2-indel.Po include ./$(DEPDIR)/gsnapl_sse2-indexdb.Po include ./$(DEPDIR)/gsnapl_sse2-intersect.Po include ./$(DEPDIR)/gsnapl_sse2-interval.Po include ./$(DEPDIR)/gsnapl_sse2-intlist.Po include ./$(DEPDIR)/gsnapl_sse2-intron.Po include ./$(DEPDIR)/gsnapl_sse2-junction.Po include ./$(DEPDIR)/gsnapl_sse2-kmer-search.Po include ./$(DEPDIR)/gsnapl_sse2-ladder.Po include ./$(DEPDIR)/gsnapl_sse2-list.Po include ./$(DEPDIR)/gsnapl_sse2-littleendian.Po include ./$(DEPDIR)/gsnapl_sse2-localdb.Po include ./$(DEPDIR)/gsnapl_sse2-mapq.Po include ./$(DEPDIR)/gsnapl_sse2-maxent.Po include ./$(DEPDIR)/gsnapl_sse2-maxent_hr.Po include ./$(DEPDIR)/gsnapl_sse2-md5.Po include ./$(DEPDIR)/gsnapl_sse2-mem.Po include ./$(DEPDIR)/gsnapl_sse2-merge-heap-diagonals.Po include ./$(DEPDIR)/gsnapl_sse2-merge-heap-records.Po include ./$(DEPDIR)/gsnapl_sse2-merge-simd-diagonals.Po include ./$(DEPDIR)/gsnapl_sse2-merge-uint4.Po include ./$(DEPDIR)/gsnapl_sse2-method.Po include ./$(DEPDIR)/gsnapl_sse2-oligo.Po include ./$(DEPDIR)/gsnapl_sse2-oligoindex_hr.Po include ./$(DEPDIR)/gsnapl_sse2-orderstat.Po include ./$(DEPDIR)/gsnapl_sse2-outbuffer.Po include ./$(DEPDIR)/gsnapl_sse2-output.Po include ./$(DEPDIR)/gsnapl_sse2-pair.Po include ./$(DEPDIR)/gsnapl_sse2-pairpool.Po include ./$(DEPDIR)/gsnapl_sse2-parserange.Po include ./$(DEPDIR)/gsnapl_sse2-path-solve.Po include ./$(DEPDIR)/gsnapl_sse2-pbinom.Po include ./$(DEPDIR)/gsnapl_sse2-popcount.Po include ./$(DEPDIR)/gsnapl_sse2-reader.Po include ./$(DEPDIR)/gsnapl_sse2-request.Po include ./$(DEPDIR)/gsnapl_sse2-resulthr.Po include ./$(DEPDIR)/gsnapl_sse2-samheader.Po include ./$(DEPDIR)/gsnapl_sse2-samprint.Po include ./$(DEPDIR)/gsnapl_sse2-sedgesort.Po include ./$(DEPDIR)/gsnapl_sse2-segment-search.Po include ./$(DEPDIR)/gsnapl_sse2-segmentpos.Po include ./$(DEPDIR)/gsnapl_sse2-semaphore.Po include ./$(DEPDIR)/gsnapl_sse2-sequence.Po include ./$(DEPDIR)/gsnapl_sse2-shortread.Po include ./$(DEPDIR)/gsnapl_sse2-smooth.Po include ./$(DEPDIR)/gsnapl_sse2-splice.Po include ./$(DEPDIR)/gsnapl_sse2-splicestringpool.Po include ./$(DEPDIR)/gsnapl_sse2-splicetrie.Po include ./$(DEPDIR)/gsnapl_sse2-splicetrie_build.Po include ./$(DEPDIR)/gsnapl_sse2-stage1hr.Po include ./$(DEPDIR)/gsnapl_sse2-stage2.Po include ./$(DEPDIR)/gsnapl_sse2-stage3.Po include ./$(DEPDIR)/gsnapl_sse2-stage3hr.Po include ./$(DEPDIR)/gsnapl_sse2-stopwatch.Po include ./$(DEPDIR)/gsnapl_sse2-substring.Po include ./$(DEPDIR)/gsnapl_sse2-terminal.Po include ./$(DEPDIR)/gsnapl_sse2-transcript.Po include ./$(DEPDIR)/gsnapl_sse2-transcriptome.Po include ./$(DEPDIR)/gsnapl_sse2-uint8list.Po include ./$(DEPDIR)/gsnapl_sse2-uint8table.Po include ./$(DEPDIR)/gsnapl_sse2-uintlist.Po include ./$(DEPDIR)/gsnapl_sse2-uinttable.Po include ./$(DEPDIR)/gsnapl_sse2-univdiag.Po include ./$(DEPDIR)/gsnapl_sse2-univinterval.Po include ./$(DEPDIR)/gsnapl_sse41-access.Po include ./$(DEPDIR)/gsnapl_sse41-assert.Po include ./$(DEPDIR)/gsnapl_sse41-atoi.Po include ./$(DEPDIR)/gsnapl_sse41-bigendian.Po include ./$(DEPDIR)/gsnapl_sse41-bitpack64-access.Po include ./$(DEPDIR)/gsnapl_sse41-bitpack64-read.Po include ./$(DEPDIR)/gsnapl_sse41-bitpack64-readtwo.Po include ./$(DEPDIR)/gsnapl_sse41-boyer-moore.Po include ./$(DEPDIR)/gsnapl_sse41-bzip2.Po include ./$(DEPDIR)/gsnapl_sse41-cellpool.Po include ./$(DEPDIR)/gsnapl_sse41-changepoint.Po include ./$(DEPDIR)/gsnapl_sse41-chimera.Po include ./$(DEPDIR)/gsnapl_sse41-chrnum.Po include ./$(DEPDIR)/gsnapl_sse41-chrom.Po include ./$(DEPDIR)/gsnapl_sse41-cigar.Po include ./$(DEPDIR)/gsnapl_sse41-cmet.Po include ./$(DEPDIR)/gsnapl_sse41-compress.Po include ./$(DEPDIR)/gsnapl_sse41-concordance.Po include ./$(DEPDIR)/gsnapl_sse41-datadir.Po include ./$(DEPDIR)/gsnapl_sse41-diag.Po include ./$(DEPDIR)/gsnapl_sse41-diagpool.Po include ./$(DEPDIR)/gsnapl_sse41-distant-rna.Po include ./$(DEPDIR)/gsnapl_sse41-doublelist.Po include ./$(DEPDIR)/gsnapl_sse41-dynprog.Po include ./$(DEPDIR)/gsnapl_sse41-dynprog_cdna.Po include ./$(DEPDIR)/gsnapl_sse41-dynprog_end.Po include ./$(DEPDIR)/gsnapl_sse41-dynprog_genome.Po include ./$(DEPDIR)/gsnapl_sse41-dynprog_simd.Po include ./$(DEPDIR)/gsnapl_sse41-dynprog_single.Po include ./$(DEPDIR)/gsnapl_sse41-epu16-bitpack64-read.Po include ./$(DEPDIR)/gsnapl_sse41-epu16-bitpack64-readtwo.Po include ./$(DEPDIR)/gsnapl_sse41-except.Po include ./$(DEPDIR)/gsnapl_sse41-extension-search.Po include ./$(DEPDIR)/gsnapl_sse41-filestring.Po include ./$(DEPDIR)/gsnapl_sse41-fopen.Po include ./$(DEPDIR)/gsnapl_sse41-gbuffer.Po include ./$(DEPDIR)/gsnapl_sse41-genome.Po include ./$(DEPDIR)/gsnapl_sse41-genome128_consec.Po include ./$(DEPDIR)/gsnapl_sse41-genome128_hr.Po include ./$(DEPDIR)/gsnapl_sse41-genome_sites.Po include ./$(DEPDIR)/gsnapl_sse41-genomicpos.Po include ./$(DEPDIR)/gsnapl_sse41-getline.Po include ./$(DEPDIR)/gsnapl_sse41-getopt.Po include ./$(DEPDIR)/gsnapl_sse41-getopt1.Po include ./$(DEPDIR)/gsnapl_sse41-gsnap.Po include ./$(DEPDIR)/gsnapl_sse41-iit-read-univ.Po include ./$(DEPDIR)/gsnapl_sse41-iit-read.Po include ./$(DEPDIR)/gsnapl_sse41-inbuffer.Po include ./$(DEPDIR)/gsnapl_sse41-indel.Po include ./$(DEPDIR)/gsnapl_sse41-indexdb.Po include ./$(DEPDIR)/gsnapl_sse41-intersect.Po include ./$(DEPDIR)/gsnapl_sse41-interval.Po include ./$(DEPDIR)/gsnapl_sse41-intlist.Po include ./$(DEPDIR)/gsnapl_sse41-intron.Po include ./$(DEPDIR)/gsnapl_sse41-junction.Po include ./$(DEPDIR)/gsnapl_sse41-kmer-search.Po include ./$(DEPDIR)/gsnapl_sse41-ladder.Po include ./$(DEPDIR)/gsnapl_sse41-list.Po include ./$(DEPDIR)/gsnapl_sse41-littleendian.Po include ./$(DEPDIR)/gsnapl_sse41-localdb.Po include ./$(DEPDIR)/gsnapl_sse41-mapq.Po include ./$(DEPDIR)/gsnapl_sse41-maxent.Po include ./$(DEPDIR)/gsnapl_sse41-maxent_hr.Po include ./$(DEPDIR)/gsnapl_sse41-md5.Po include ./$(DEPDIR)/gsnapl_sse41-mem.Po include ./$(DEPDIR)/gsnapl_sse41-merge-heap-diagonals.Po include ./$(DEPDIR)/gsnapl_sse41-merge-heap-records.Po include ./$(DEPDIR)/gsnapl_sse41-merge-simd-diagonals.Po include ./$(DEPDIR)/gsnapl_sse41-merge-uint4.Po include ./$(DEPDIR)/gsnapl_sse41-method.Po include ./$(DEPDIR)/gsnapl_sse41-oligo.Po include ./$(DEPDIR)/gsnapl_sse41-oligoindex_hr.Po include ./$(DEPDIR)/gsnapl_sse41-orderstat.Po include ./$(DEPDIR)/gsnapl_sse41-outbuffer.Po include ./$(DEPDIR)/gsnapl_sse41-output.Po include ./$(DEPDIR)/gsnapl_sse41-pair.Po include ./$(DEPDIR)/gsnapl_sse41-pairpool.Po include ./$(DEPDIR)/gsnapl_sse41-parserange.Po include ./$(DEPDIR)/gsnapl_sse41-path-solve.Po include ./$(DEPDIR)/gsnapl_sse41-pbinom.Po include ./$(DEPDIR)/gsnapl_sse41-popcount.Po include ./$(DEPDIR)/gsnapl_sse41-reader.Po include ./$(DEPDIR)/gsnapl_sse41-request.Po include ./$(DEPDIR)/gsnapl_sse41-resulthr.Po include ./$(DEPDIR)/gsnapl_sse41-samheader.Po include ./$(DEPDIR)/gsnapl_sse41-samprint.Po include ./$(DEPDIR)/gsnapl_sse41-sedgesort.Po include ./$(DEPDIR)/gsnapl_sse41-segment-search.Po include ./$(DEPDIR)/gsnapl_sse41-segmentpos.Po include ./$(DEPDIR)/gsnapl_sse41-semaphore.Po include ./$(DEPDIR)/gsnapl_sse41-sequence.Po include ./$(DEPDIR)/gsnapl_sse41-shortread.Po include ./$(DEPDIR)/gsnapl_sse41-smooth.Po include ./$(DEPDIR)/gsnapl_sse41-splice.Po include ./$(DEPDIR)/gsnapl_sse41-splicestringpool.Po include ./$(DEPDIR)/gsnapl_sse41-splicetrie.Po include ./$(DEPDIR)/gsnapl_sse41-splicetrie_build.Po include ./$(DEPDIR)/gsnapl_sse41-stage1hr.Po include ./$(DEPDIR)/gsnapl_sse41-stage2.Po include ./$(DEPDIR)/gsnapl_sse41-stage3.Po include ./$(DEPDIR)/gsnapl_sse41-stage3hr.Po include ./$(DEPDIR)/gsnapl_sse41-stopwatch.Po include ./$(DEPDIR)/gsnapl_sse41-substring.Po include ./$(DEPDIR)/gsnapl_sse41-terminal.Po include ./$(DEPDIR)/gsnapl_sse41-transcript.Po include ./$(DEPDIR)/gsnapl_sse41-transcriptome.Po include ./$(DEPDIR)/gsnapl_sse41-uint8list.Po include ./$(DEPDIR)/gsnapl_sse41-uint8table.Po include ./$(DEPDIR)/gsnapl_sse41-uintlist.Po include ./$(DEPDIR)/gsnapl_sse41-uinttable.Po include ./$(DEPDIR)/gsnapl_sse41-univdiag.Po include ./$(DEPDIR)/gsnapl_sse41-univinterval.Po include ./$(DEPDIR)/gsnapl_sse42-access.Po include ./$(DEPDIR)/gsnapl_sse42-assert.Po include ./$(DEPDIR)/gsnapl_sse42-atoi.Po include ./$(DEPDIR)/gsnapl_sse42-bigendian.Po include ./$(DEPDIR)/gsnapl_sse42-bitpack64-access.Po include ./$(DEPDIR)/gsnapl_sse42-bitpack64-read.Po include ./$(DEPDIR)/gsnapl_sse42-bitpack64-readtwo.Po include ./$(DEPDIR)/gsnapl_sse42-boyer-moore.Po include ./$(DEPDIR)/gsnapl_sse42-bzip2.Po include ./$(DEPDIR)/gsnapl_sse42-cellpool.Po include ./$(DEPDIR)/gsnapl_sse42-changepoint.Po include ./$(DEPDIR)/gsnapl_sse42-chimera.Po include ./$(DEPDIR)/gsnapl_sse42-chrnum.Po include ./$(DEPDIR)/gsnapl_sse42-chrom.Po include ./$(DEPDIR)/gsnapl_sse42-cigar.Po include ./$(DEPDIR)/gsnapl_sse42-cmet.Po include ./$(DEPDIR)/gsnapl_sse42-compress.Po include ./$(DEPDIR)/gsnapl_sse42-concordance.Po include ./$(DEPDIR)/gsnapl_sse42-datadir.Po include ./$(DEPDIR)/gsnapl_sse42-diag.Po include ./$(DEPDIR)/gsnapl_sse42-diagpool.Po include ./$(DEPDIR)/gsnapl_sse42-distant-rna.Po include ./$(DEPDIR)/gsnapl_sse42-doublelist.Po include ./$(DEPDIR)/gsnapl_sse42-dynprog.Po include ./$(DEPDIR)/gsnapl_sse42-dynprog_cdna.Po include ./$(DEPDIR)/gsnapl_sse42-dynprog_end.Po include ./$(DEPDIR)/gsnapl_sse42-dynprog_genome.Po include ./$(DEPDIR)/gsnapl_sse42-dynprog_simd.Po include ./$(DEPDIR)/gsnapl_sse42-dynprog_single.Po include ./$(DEPDIR)/gsnapl_sse42-epu16-bitpack64-read.Po include ./$(DEPDIR)/gsnapl_sse42-epu16-bitpack64-readtwo.Po include ./$(DEPDIR)/gsnapl_sse42-except.Po include ./$(DEPDIR)/gsnapl_sse42-extension-search.Po include ./$(DEPDIR)/gsnapl_sse42-filestring.Po include ./$(DEPDIR)/gsnapl_sse42-fopen.Po include ./$(DEPDIR)/gsnapl_sse42-gbuffer.Po include ./$(DEPDIR)/gsnapl_sse42-genome.Po include ./$(DEPDIR)/gsnapl_sse42-genome128_consec.Po include ./$(DEPDIR)/gsnapl_sse42-genome128_hr.Po include ./$(DEPDIR)/gsnapl_sse42-genome_sites.Po include ./$(DEPDIR)/gsnapl_sse42-genomicpos.Po include ./$(DEPDIR)/gsnapl_sse42-getline.Po include ./$(DEPDIR)/gsnapl_sse42-getopt.Po include ./$(DEPDIR)/gsnapl_sse42-getopt1.Po include ./$(DEPDIR)/gsnapl_sse42-gsnap.Po include ./$(DEPDIR)/gsnapl_sse42-iit-read-univ.Po include ./$(DEPDIR)/gsnapl_sse42-iit-read.Po include ./$(DEPDIR)/gsnapl_sse42-inbuffer.Po include ./$(DEPDIR)/gsnapl_sse42-indel.Po include ./$(DEPDIR)/gsnapl_sse42-indexdb.Po include ./$(DEPDIR)/gsnapl_sse42-intersect.Po include ./$(DEPDIR)/gsnapl_sse42-interval.Po include ./$(DEPDIR)/gsnapl_sse42-intlist.Po include ./$(DEPDIR)/gsnapl_sse42-intron.Po include ./$(DEPDIR)/gsnapl_sse42-junction.Po include ./$(DEPDIR)/gsnapl_sse42-kmer-search.Po include ./$(DEPDIR)/gsnapl_sse42-ladder.Po include ./$(DEPDIR)/gsnapl_sse42-list.Po include ./$(DEPDIR)/gsnapl_sse42-littleendian.Po include ./$(DEPDIR)/gsnapl_sse42-localdb.Po include ./$(DEPDIR)/gsnapl_sse42-mapq.Po include ./$(DEPDIR)/gsnapl_sse42-maxent.Po include ./$(DEPDIR)/gsnapl_sse42-maxent_hr.Po include ./$(DEPDIR)/gsnapl_sse42-md5.Po include ./$(DEPDIR)/gsnapl_sse42-mem.Po include ./$(DEPDIR)/gsnapl_sse42-merge-heap-diagonals.Po include ./$(DEPDIR)/gsnapl_sse42-merge-heap-records.Po include ./$(DEPDIR)/gsnapl_sse42-merge-simd-diagonals.Po include ./$(DEPDIR)/gsnapl_sse42-merge-uint4.Po include ./$(DEPDIR)/gsnapl_sse42-method.Po include ./$(DEPDIR)/gsnapl_sse42-oligo.Po include ./$(DEPDIR)/gsnapl_sse42-oligoindex_hr.Po include ./$(DEPDIR)/gsnapl_sse42-orderstat.Po include ./$(DEPDIR)/gsnapl_sse42-outbuffer.Po include ./$(DEPDIR)/gsnapl_sse42-output.Po include ./$(DEPDIR)/gsnapl_sse42-pair.Po include ./$(DEPDIR)/gsnapl_sse42-pairpool.Po include ./$(DEPDIR)/gsnapl_sse42-parserange.Po include ./$(DEPDIR)/gsnapl_sse42-path-solve.Po include ./$(DEPDIR)/gsnapl_sse42-pbinom.Po include ./$(DEPDIR)/gsnapl_sse42-popcount.Po include ./$(DEPDIR)/gsnapl_sse42-reader.Po include ./$(DEPDIR)/gsnapl_sse42-request.Po include ./$(DEPDIR)/gsnapl_sse42-resulthr.Po include ./$(DEPDIR)/gsnapl_sse42-samheader.Po include ./$(DEPDIR)/gsnapl_sse42-samprint.Po include ./$(DEPDIR)/gsnapl_sse42-sedgesort.Po include ./$(DEPDIR)/gsnapl_sse42-segment-search.Po include ./$(DEPDIR)/gsnapl_sse42-segmentpos.Po include ./$(DEPDIR)/gsnapl_sse42-semaphore.Po include ./$(DEPDIR)/gsnapl_sse42-sequence.Po include ./$(DEPDIR)/gsnapl_sse42-shortread.Po include ./$(DEPDIR)/gsnapl_sse42-smooth.Po include ./$(DEPDIR)/gsnapl_sse42-splice.Po include ./$(DEPDIR)/gsnapl_sse42-splicestringpool.Po include ./$(DEPDIR)/gsnapl_sse42-splicetrie.Po include ./$(DEPDIR)/gsnapl_sse42-splicetrie_build.Po include ./$(DEPDIR)/gsnapl_sse42-stage1hr.Po include ./$(DEPDIR)/gsnapl_sse42-stage2.Po include ./$(DEPDIR)/gsnapl_sse42-stage3.Po include ./$(DEPDIR)/gsnapl_sse42-stage3hr.Po include ./$(DEPDIR)/gsnapl_sse42-stopwatch.Po include ./$(DEPDIR)/gsnapl_sse42-substring.Po include ./$(DEPDIR)/gsnapl_sse42-terminal.Po include ./$(DEPDIR)/gsnapl_sse42-transcript.Po include ./$(DEPDIR)/gsnapl_sse42-transcriptome.Po include ./$(DEPDIR)/gsnapl_sse42-uint8list.Po include ./$(DEPDIR)/gsnapl_sse42-uint8table.Po include ./$(DEPDIR)/gsnapl_sse42-uintlist.Po include ./$(DEPDIR)/gsnapl_sse42-uinttable.Po include ./$(DEPDIR)/gsnapl_sse42-univdiag.Po include ./$(DEPDIR)/gsnapl_sse42-univinterval.Po include ./$(DEPDIR)/gsnapl_ssse3-access.Po include ./$(DEPDIR)/gsnapl_ssse3-assert.Po include ./$(DEPDIR)/gsnapl_ssse3-atoi.Po include ./$(DEPDIR)/gsnapl_ssse3-bigendian.Po include ./$(DEPDIR)/gsnapl_ssse3-bitpack64-access.Po include ./$(DEPDIR)/gsnapl_ssse3-bitpack64-read.Po include ./$(DEPDIR)/gsnapl_ssse3-bitpack64-readtwo.Po include ./$(DEPDIR)/gsnapl_ssse3-boyer-moore.Po include ./$(DEPDIR)/gsnapl_ssse3-bzip2.Po include ./$(DEPDIR)/gsnapl_ssse3-cellpool.Po include ./$(DEPDIR)/gsnapl_ssse3-changepoint.Po include ./$(DEPDIR)/gsnapl_ssse3-chimera.Po include ./$(DEPDIR)/gsnapl_ssse3-chrnum.Po include ./$(DEPDIR)/gsnapl_ssse3-chrom.Po include ./$(DEPDIR)/gsnapl_ssse3-cigar.Po include ./$(DEPDIR)/gsnapl_ssse3-cmet.Po include ./$(DEPDIR)/gsnapl_ssse3-compress.Po include ./$(DEPDIR)/gsnapl_ssse3-concordance.Po include ./$(DEPDIR)/gsnapl_ssse3-datadir.Po include ./$(DEPDIR)/gsnapl_ssse3-diag.Po include ./$(DEPDIR)/gsnapl_ssse3-diagpool.Po include ./$(DEPDIR)/gsnapl_ssse3-distant-rna.Po include ./$(DEPDIR)/gsnapl_ssse3-doublelist.Po include ./$(DEPDIR)/gsnapl_ssse3-dynprog.Po include ./$(DEPDIR)/gsnapl_ssse3-dynprog_cdna.Po include ./$(DEPDIR)/gsnapl_ssse3-dynprog_end.Po include ./$(DEPDIR)/gsnapl_ssse3-dynprog_genome.Po include ./$(DEPDIR)/gsnapl_ssse3-dynprog_simd.Po include ./$(DEPDIR)/gsnapl_ssse3-dynprog_single.Po include 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