diamond v0.9.13.114 | by Benjamin Buchfink <buchfink@gmail.com>
Licensed under the GNU AGPL <https://www.gnu.org/licenses/agpl.txt>
Check http://github.com/bbuchfink/diamond for updates.

#CPU threads: 20
Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1)
#Target sequences to report alignments for: 25
Temporary directory: /storages/10TB-79/pitagoras/lnc_pipeline/step_4-tmp
Opening the database...  [0.002195s]
Opening the input file...  [0.238761s]
Opening the output file...  [0.00169s]
Loading query sequences...  [1.44172s]
Masking queries...  [1.14929s]
Building query seed set...  [0.039758s]
Algorithm: Double-indexed
Building query histograms...  [0.119397s]
Allocating buffers...  [0.000115s]
Loading reference sequences...  [8.14061s]
Building reference histograms...  [2.52538s]
Allocating buffers...  [0.000115s]
Initializing temporary storage...  [1.1065s]
Processing query chunk 0, reference chunk 0, shape 0, index chunk 0.
Building reference index...  [4.69961s]
Building query index...  [0.114739s]
Building seed filter...  [0.26793s]
Searching alignments...  [0.806959s]
Processing query chunk 0, reference chunk 0, shape 0, index chunk 1.
Building reference index...  [4.36632s]
Building query index...  [0.114204s]
Building seed filter...  [0.362649s]
Searching alignments...  [0.761991s]
Processing query chunk 0, reference chunk 0, shape 0, index chunk 2.
Building reference index...  [4.55036s]
Building query index...  [0.150921s]
Building seed filter...  [0.358013s]
Searching alignments...  [0.785735s]
Processing query chunk 0, reference chunk 0, shape 0, index chunk 3.
Building reference index...  [3.98675s]
Building query index...  [0.128132s]
Building seed filter...  [0.227577s]
Searching alignments...  [0.834719s]
Processing query chunk 0, reference chunk 0, shape 1, index chunk 0.
Building reference index...  [3.99509s]
Building query index...  [0.11732s]
Building seed filter...  [0.219594s]
Searching alignments...  [0.717913s]
Processing query chunk 0, reference chunk 0, shape 1, index chunk 1.
Building reference index...  [4.43854s]
Building query index...  [0.157788s]
Building seed filter...  [0.270327s]
Searching alignments...  [0.654849s]
Processing query chunk 0, reference chunk 0, shape 1, index chunk 2.
Building reference index...  [4.56628s]
Building query index...  [0.14763s]
Building seed filter...  [0.478524s]
Searching alignments...  [0.735113s]
Processing query chunk 0, reference chunk 0, shape 1, index chunk 3.
Building reference index...  [3.88173s]
Building query index...  [0.112557s]
Building seed filter...  [0.266649s]
Searching alignments...  [0.72314s]
Deallocating buffers...  [0.665512s]
Opening temporary output file...  [0.005631s]
Computing alignments...  [2.37827s]
Deallocating reference...  [0.735196s]
Loading reference sequences...  [7.19202s]
Building reference histograms...  [2.59508s]
Allocating buffers...  [6e-05s]
Initializing temporary storage...  [1.08674s]
Processing query chunk 0, reference chunk 1, shape 0, index chunk 0.
Building reference index...  [4.87864s]
Building query index...  [0.150339s]
Building seed filter...  [0.223452s]
Searching alignments...  [0.85957s]
Processing query chunk 0, reference chunk 1, shape 0, index chunk 1.
Building reference index...  [4.52153s]
Building query index...  [0.136122s]
Building seed filter...  [0.217508s]
Searching alignments...  [0.886289s]
Processing query chunk 0, reference chunk 1, shape 0, index chunk 2.
Building reference index...  [4.88215s]
Building query index...  [0.127599s]
Building seed filter...  [0.217401s]
Searching alignments...  [0.86523s]
Processing query chunk 0, reference chunk 1, shape 0, index chunk 3.
Building reference index...  [4.26695s]
Building query index...  [0.133705s]
Building seed filter...  [0.23708s]
Searching alignments...  [0.755542s]
Processing query chunk 0, reference chunk 1, shape 1, index chunk 0.
Building reference index...  [3.94398s]
Building query index...  [0.10553s]
Building seed filter...  [0.415961s]
Searching alignments...  [0.695485s]
Processing query chunk 0, reference chunk 1, shape 1, index chunk 1.
Building reference index...  [4.43389s]
Building query index...  [0.131728s]
Building seed filter...  [0.293747s]
Searching alignments...  [0.783105s]
Processing query chunk 0, reference chunk 1, shape 1, index chunk 2.
Building reference index...  [4.67399s]
Building query index...  [0.135051s]
Building seed filter...  [0.308384s]
Searching alignments...  [0.800988s]
Processing query chunk 0, reference chunk 1, shape 1, index chunk 3.
Building reference index...  [4.07s]
Building query index...  [0.117418s]
Building seed filter...  [0.225755s]
Searching alignments...  [0.815507s]
Deallocating buffers...  [0.697935s]
Opening temporary output file...  [0.005513s]
Computing alignments...  [2.08958s]
Deallocating reference...  [0.697394s]
Loading reference sequences...  [4.93253s]
Building reference histograms...  [2.92666s]
Allocating buffers...  [6.6e-05s]
Initializing temporary storage...  [1.06885s]
Processing query chunk 0, reference chunk 2, shape 0, index chunk 0.
Building reference index...  [4.34816s]
Building query index...  [0.114457s]
Building seed filter...  [0.929763s]
Searching alignments...  [0.747992s]
Processing query chunk 0, reference chunk 2, shape 0, index chunk 1.
Building reference index...  [4.59276s]
Building query index...  [0.148371s]
Building seed filter...  [0.357824s]
Searching alignments...  [0.829516s]
Processing query chunk 0, reference chunk 2, shape 0, index chunk 2.
Building reference index...  [4.62128s]
Building query index...  [0.135766s]
Building seed filter...  [0.59795s]
Searching alignments...  [0.797727s]
Processing query chunk 0, reference chunk 2, shape 0, index chunk 3.
Building reference index...