public final class Places
extends java.lang.Object
Modifier and Type | Field and Description |
---|---|
static java.io.File |
conditionInputFile
The file that describes what is the condition of each sample.
|
static java.lang.String |
conditionInputFileName
The name of the file that describes what is the condition of each sample.
|
static java.io.File |
countReadsInputFile
The file that stores the count reads for the modules to use.
|
static java.lang.String |
countReadsInputFileName
The name of the file that stores the count reads for the modules to use.
|
static java.io.File |
defaultModulesDir
The directory where the defaults module, that can be loaded to modulesDir, are stored.
|
static java.io.File |
finalResultsDir
The place where all the results generated by the modules are saved after analysis.
|
static java.io.File |
installPackageScript |
static java.io.File |
jarFolder
The directory in which r-peridot is located.
|
static java.io.File |
modulesDir
The place where all the modules available to the user are stored, each on
it's own directory.
|
static java.io.File |
peridotConfigFile |
static java.io.File |
peridotDir
The master directory where all the user stuff is stored.
|
static java.io.File |
readPackagesScript |
Modifier | Constructor and Description |
---|---|
private |
Places() |
Modifier and Type | Method and Description |
---|---|
static void |
createPeridotDir()
Creates peridotDir and finalResultsDir, if they do not yet.
|
static java.lang.String[] |
defaultRportableDirs() |
static java.io.File |
getDefaultModulesDir() |
static java.util.Set<java.lang.String> |
getDefaultRexecs() |
static java.io.File |
getJarFolder() |
static java.lang.String |
getUserHomePath() |
static java.lang.String[] |
getWin64And32ExecsFrom(java.lang.String rWindowsDir) |
static java.util.Set<java.lang.String> |
linuxRexes() |
static void |
updateModulesDir(boolean overwrite)
Update each of the modules in modulesDir, based on the modules in defaultModulesDir.
|
private static void |
updateModulesFolder(boolean overwrite)
1.
|
static java.util.Set<java.lang.String> |
windowsRexes() |
public static java.io.File peridotDir
public static java.io.File peridotConfigFile
public static java.io.File finalResultsDir
public static java.io.File modulesDir
public static java.io.File readPackagesScript
public static java.io.File installPackageScript
public static java.lang.String countReadsInputFileName
public static java.io.File countReadsInputFile
public static java.lang.String conditionInputFileName
public static java.io.File conditionInputFile
public static java.io.File jarFolder
public static java.io.File defaultModulesDir
public static java.lang.String getUserHomePath()
public static void createPeridotDir()
public static java.io.File getDefaultModulesDir()
public static void updateModulesDir(boolean overwrite)
overwrite
- True to force the update of modules
if they already exist in modulesDir.private static void updateModulesFolder(boolean overwrite) throws java.lang.Exception
overwrite
- If already loaded modules should be overwritten.java.lang.Exception
public static java.lang.String[] getWin64And32ExecsFrom(java.lang.String rWindowsDir)
public static java.lang.String[] defaultRportableDirs()
public static java.util.Set<java.lang.String> windowsRexes()
public static java.util.Set<java.lang.String> linuxRexes()
public static java.util.Set<java.lang.String> getDefaultRexecs()
public static java.io.File getJarFolder()