public class AnalysisModule extends RModule
availableModules, availableParamTypes, binExtension, configFile, environmentCreated, info, mandatoryFailed, mandatoryResults, max2Conditions, name, needsReplicates, parameters, requiredExternalFiles, requiredPackages, requiredParameters, requiredScripts, results, resultsFolder, scriptContent, scriptFile, scriptName, workingDirectory
Constructor and Description |
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AnalysisModule(java.io.File dir) |
AnalysisModule(java.lang.String name,
java.lang.String scriptFile,
java.util.Map<java.lang.String,java.lang.Class> requiredParameters,
java.util.Set<java.lang.String> requiredExternalFiles,
java.util.Set<java.lang.String> results) |
cleanLocalResults, cleanTempFiles, clearEnvironment, clearParameters, clearResults, createClassDescription, createConfig, createConfigFile, createEnvironment, deleteScript, exportScriptToDir, filesAreInRequirements, filesSufficed, getAvailableAnalysisModules, getAvailableModules, getAvailablePostAnalysisModules, getConfigFile, getConfigPath, getDescriptionFile, getInputFiles, getNotExistantResults, getParamsDescription, getRequiredParametersFromModules, getScriptFile, getScriptPath, getScriptType, getWorkingDirectory, getWorkingDirectoryPath, loadUserScripts, modulesWithUnmetDependencies, modulesWithUnmetDependencies, parametersSufficed, passParameter, passParameters, removeScriptResults, requiredPackages, requiredPackagesInstalled, requiredPackagesInstalled, requiredPackagesNotInstalled, requiredPackagesNotInstalled, requirementsSufficed, saveResults, setInfo, setResultAsMandatory, toBin, updateUserScripts, verifyResults
public AnalysisModule(java.lang.String name, java.lang.String scriptFile, java.util.Map<java.lang.String,java.lang.Class> requiredParameters, java.util.Set<java.lang.String> requiredExternalFiles, java.util.Set<java.lang.String> results)
public AnalysisModule(java.io.File dir) throws java.lang.Exception
java.lang.Exception