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P

pack - Variable in class peridot.script.r.PackageInstaller
 
Package - Class in peridot.script.r
 
Package(String, String) - Constructor for class peridot.script.r.Package
 
PackageInstaller - Class in peridot.script.r
R package installer for R environments Created by pentalpha on 19/02/2018.
PackageInstaller(Interpreter, Package) - Constructor for class peridot.script.r.PackageInstaller
 
PackageInstaller.Status - Enum in peridot.script.r
 
packages - Variable in class peridot.script.r.RInfoParser
 
packagesFinishedFlag - Variable in class peridot.script.Task
 
packagesRepository - Variable in class peridot.Archiver.PeridotConfig
 
packagesToInstallString() - Method in class peridot.script.r.Interpreter
 
paramEqualStr - Static variable in class peridot.CLI.AnalysisFileParser
 
parameters - Variable in class peridot.AnalysisParameters
The parameters that have already been passed.
parameters - Variable in class peridot.script.RModule
 
parametersSufficed() - Method in class peridot.script.RModule
 
paramModSeparator - Static variable in class peridot.CLI.AnalysisFileParser
 
params - Variable in class peridot.CLI.AnalysisFile
 
params - Variable in class peridot.CLI.AnalysisFileParser
 
params - Variable in class peridot.script.Task
 
paramsStartStr - Static variable in class peridot.CLI.AnalysisFileParser
 
paramTypes - Variable in class peridot.CLI.AnalysisFileParser
 
parse(File) - Method in class peridot.CLI.AnalysisFileParser
 
ParseException(String) - Constructor for exception peridot.CLI.AnalysisFileParser.ParseException
 
parseOutput(Output) - Method in class peridot.script.r.PackageInstaller
 
parseParams(Set<String>) - Method in class peridot.CLI.AnalysisFileParser
 
parseParamsAndModules(String, Set<String>) - Method in class peridot.CLI.AnalysisFileParser
 
parseSingleLineInfo(String, String) - Method in class peridot.CLI.AnalysisFileParser
 
passParameter(String, Object) - Method in class peridot.AnalysisParameters
Pass a parameter.
passParameter(String, Object) - Method in class peridot.script.RModule
 
passParameters(AnalysisParameters) - Method in class peridot.script.RModule
 
peridot - package peridot
 
peridot.Archiver - package peridot.Archiver
 
peridot.CLI - package peridot.CLI
 
peridot.CLI.Commands - package peridot.CLI.Commands
 
peridot.script - package peridot.script
 
peridot.script.r - package peridot.script.r
 
PeridotCmd - Class in peridot.CLI
 
PeridotCmd() - Constructor for class peridot.CLI.PeridotCmd
 
PeridotConfig - Class in peridot.Archiver
Changing, saving and loading configurations like preferred R environment and packages repository
PeridotConfig() - Constructor for class peridot.Archiver.PeridotConfig
 
peridotConfigFile - Static variable in class peridot.Archiver.Places
 
peridotDir - Static variable in class peridot.Archiver.Places
The master directory where all the user stuff is stored.
Persistence - Class in peridot.Archiver
Utilities to import and export Objects
Persistence() - Constructor for class peridot.Archiver.Persistence
 
Places - Class in peridot.Archiver
Archiver.Places holds file and directories paths.
Places() - Constructor for class peridot.Archiver.Places
 
playReady() - Method in class peridot.script.Task
 
PostAnalysisModule - Class in peridot.script
 
PostAnalysisModule(String, String, Map<String, Class>, Set<String>, Set<String>, Set<String>) - Constructor for class peridot.script.PostAnalysisModule
 
PostAnalysisModule(File) - Constructor for class peridot.script.PostAnalysisModule
 
PostAnalysisOntology - Class in peridot.script
 
PostAnalysisOntology(String, String) - Constructor for class peridot.script.PostAnalysisOntology
 
PostAnalysisOntology(File) - Constructor for class peridot.script.PostAnalysisOntology
 
preFailed - Variable in class peridot.script.ScriptRunnable
 
preFailed(String) - Method in class peridot.script.Task
 
preferredRVersion - Static variable in class peridot.Archiver.PeridotConfig
 
printArray(int[]) - Static method in class peridot.Global
Prints an array of integers.
printArray(String[]) - Static method in class peridot.Global
Prints an array of Strings.
printDetails() - Method in class peridot.CLI.Command
 
printInConsole - Variable in class peridot.Output
 
printInvalidCommand(String) - Static method in class peridot.CLI.UserInterface
 
printMajorHelp() - Static method in class peridot.CLI.UserInterface
 
printNoCommand() - Static method in class peridot.CLI.UserInterface
 
printRoundingTable() - Static method in class peridot.Global
 
process - Variable in class peridot.script.r.Script
 
process - Variable in class peridot.script.ScriptExec
 
process - Variable in class peridot.script.ScriptRunnable
 
processBuilder - Variable in class peridot.script.r.Script
 
processBuilder - Variable in class peridot.script.ScriptRunnable
 
processingStatus - Variable in class peridot.script.Task
 
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