•  
    • Infernal RNAfold

    Sequence

    RNA family

    Id

    From_seq

    To_seq

    Score

    Evalue

    Score

    Struct

    IRES
    Transcript_22 IRES_Bip RF00223 715 665 18.6 0.0018 -108.00

    Others-cis
    Transcript_120 IRE_I RF00037 73 108 46.8 1.7e-10 -7.50
    Transcript_134 Histone3 RF00032 660 704 32.5 1.8e-07 -11.10

    Others-gene
    Transcript_101 Metazoa_SRP RF00017 1 299 271.6 7.2e-74 -142.53

    lncRNA
    Transcript_157 KCNQ1OT1_2 RF01947 123 298 18.0 0.0038 -72.80
    Transcript_169 DLEU1_2 RF02104 1349 1118 22.4 0.00022 -73.40

    miRNA
    Transcript_117 mir-305 RF00732 2 88 36.9 5.3e-07 -72.10
    Transcript_135 mir-616 RF00995 2 93 29.8 0.0012 -39.60
    Transcript_161 mir-492 RF00989 507 622 44.1 2.6e-07 -27.50
    Transcript_174 mir-1249 RF01918 111 28 29.3 1.8e-05 -80.10
    Transcript_197 MIR477 RF00780 2 92 47.3 2.5e-10 -90.20
    Transcript_215 mir-290 RF00665 34 100 33.1 5.4e-06 -61.60
    Transcript_57 mir-460 RF00712 548 477 29.2 0.00026 -29.40
    Transcript_15 mir-17 RF00051 389 471 75.6 3.9e-19 -39.00

    rRNA
    Transcript_142 LSU_rRNA_eukarya RF02543 401 1 364.9 1.7e-91 -120.30
    Transcript_25 SSU_rRNA_bacteria RF00177 61 1013 269.9 1.3e-84 -268.42

    snoRNA
    Transcript_114 sR2 RF01139 483 530 18.2 0.0055 -6.60
    Transcript_123 TtnuCD7 RF02284 19 105 18.3 0.0036 -13.90