Transcript_142

cmscan-Rfam

Family :

LSU_rRNA_eukarya

Id:

RF02543

Type:

Gene; rRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0003735 structural constituent of ribosomeRF02543

Description:

not description

Score:

364.9

E-value:

1.7e-91

From sequence:

401

To sequence:

1

Alignments:

                             ??????                  ??????      ? ??  ??????                                       NC
                      ~~~~~~~)))))),<<<_____>>>,,,,,,]]]]]]------]-]],,[[[[[[,,,,<<<<<____>>>>>,,(((((((,,,,,...... CS
         RF02543    1 <[914]*GuaUAGGgGcGAAAGaCuAAUCGAACCauCUAGUAGCUGGUUcCcuCCGAAGuuUCCCUCAGGAuaGCuggagcuuuuuu...... 994 
                             GUAUAGGGGCGAAAGACUAAUCGAACCAUCUAGUAGCUGGUUCCCUCCGAAGUUUCCC CAGGAUAGCUGG::CU           
  Transcript_142  401 <[  0]*GUAUAGGGGCGAAAGACUAAUCGAACCAUCUAGUAGCUGGUUCCCUCCGAAGUUUCCCCCAGGAUAGCUGGCGCUCGGGGaaagau 316 
                      .......***************************************************************************44444689*** PP

                                 v                                                                              v   NC
                      .......,,,,<<<<<<<<----<<<----<<<<<<<<<<--<<<<<<-<_____>->>>>>>>>>>>>>>>>-->>->---->>>>>>>>,< CS
         RF02543  995 .......uuAGUcuuAuccGGUAAAGCgAAUGAuUAgaGGcuucggGgacgaAAugucCucgaCCuaUUcUCAAACUUUAAAUgggUaagAag 1080
                              +AG C::AUCCGGUAAAGCGAAUGAUUAGAGGC+U:GGGG CGAAA+G+CCUC:ACCUAUUCUCAAACUUUAAAUGGGU::G  :
  Transcript_142  315 aagagauGCAGUCGCAUCCGGUAAAGCGAAUGAUUAGAGGCCUUGGGGCCGAAACGACCUCAACCUAUUCUCAAACUUUAAAUGGGUGCGUGU 223 
                      ********************************************************************************************* PP

                       v   v                        v   v                             v               v             NC
                      <<<<<<<<_________...........>>>>>>>>>,,,,,,,,,,,))))))),,,,,<<<<<<<<<<_____>>>>>>>>>>,,,,<<<_ CS
         RF02543 1081 ccccgguuaCUUaauUG...........aaccggggcauuuaAuauaaagcuccaAGUGGGCCAcUUuUGGUAAGCAgAAgUGGCGAUGcGGG 1162
                      C C:: ::AC UAA+             :: ::G G:  +U AU + +AG::CCAAGUGGGCCA UU:UGGUAAGCA:AA UGGCG UG:GGG
  Transcript_142  222 CCCGCCCUACAUAAACCaaaaauaaagaGGUGCGUGACGAUGAU-GCGAGUGCCAAGUGGGCCACUUCUGGUAAGCAGAACUGGCGCUGUGGG 131 
                      *****999999987766789999999878889999999999999.999********************************************* PP

                                 ????? ?   ???      ? ?    ???                  ??? ??????????       ?????          NC
                      _____>>>,,,(((((-(---(((------(-(..--(((------------------(((-((((((((((-------(((((,<<<--<<< CS
         RF02543 1163 AUGAACCgAAcGccggGuUAAGGuGCcuaAgUg..cacgCUcAUcuAGAuaCCAuAAAaGGUGUuggUucaUauaGACAGCaGgAcGGUGgcc 1253
                      AUGAACC:AA GCCGGGUUAAGG G C +A     +ACGCUCAU  AGA +CCAU AAAGGUGUUGGUU  UA+AGACAGCAGGACGGUGGCC
  Transcript_142  130 AUGAACCAAAAGCCGGGUUAAGGCGUCCGAUGCcgAACGCUCAU-GAGACCCCAUGAAAGGUGUUGGUUGCUAAAGACAGCAGGACGGUGGCC 39  
                      ******************************976679********.7*********************************************** PP

                                                                     NC
                      _________>>>-->>><___><---<<______>>->~~~~~~~~ CS
         RF02543 1254 AUGGAAGUCggaAUCCgCUAAGGAGUGUGUAACAACUC*[2110]> 3401
                      AUGGAAGUCGGAAUCCGCUAAGGAGUGUGUAACAACUC        
  Transcript_142   38 AUGGAAGUCGGAAUCCGCUAAGGAGUGUGUAACAACUC*[   0]> 1   
                      **************************************........ PP

RNAfold
>Transcript_142
AGUUGUUACACACUCCUUAGCGGAUUCCGACUUCCAUGGCCACCGUCCUG
CUGUCUUUAGCAACCAACACCUUUCAUGGGGUCUCAUGAGCGUUCGGCAU
CGGACGCCUUAACCCGGCUUUUGGUUCAUCCCACAGCGCCAGUUCUGCUU
ACCAGAAGUGGCCCACUUGGCACUCGCAUCAUCGUCACGCACCUCUUUAU
UUUUGGUUUAUGUAGGGCGGGACACGCACCCAUUUAAAGUUUGAGAAUAG
GUUGAGGUCGUUUCGGCCCCAAGGCCUCUAAUCAUUCGCUUUACCGGAUG
CGACUGCAUCUCUUAUCUUUCCCCGAGCGCCAGCUAUCCUGGGGGAAACU
UCGGAGGGAACCAGCUACUAGAUGGUUCGAUUAGUCUUUCGCCCCUAUAC
...................(((((....((((...((.(..((((((..((((......(.((((((..((..((((((....))))))(((((((....)))))))........))...))))))).((((.....((((.(((((.....))))).))))((.....(((.(((((((......(((.(((((.(((((((..(((((.((.(((((.....))).)).)).))))..)..)))))))...))))))))...((((....))))....................))))))).)))..........(((((((((((....)))....)))))))).....)).))))..)))).....)))))).).)).)))).)))))........ (-120.30)

Length sequence

: 400

Length match:

400