Transcript_157

cmscan-Rfam

Family :

KCNQ1OT1_2

Id:

RF01947

Type:

Gene; lncRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0006342 chromatin silencingRF01947

Description:

not description

Score:

18.0

E-value:

0.0038

From sequence:

123

To sequence:

298

Alignments:

                     ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CS
         RF01947  14 UGgaagCuGguuUGCuGGGGCCACCCAGuGuGGGCuCaGGAAGGGaAGGAAUGuGaCuGAGGcuGGGUGuGGCuGgGgaGaGcgCAGCcAGuuGU 108
                      G  ag    uu G  GG GCCA   AGuG G G    GGA  G  AGG AUG  aC GAG cuG G G   C G+G   a  gC GCcAG    
  Transcript_157 123 AGCGAGGCUCUUGGUGGGUGCCAAAAAGUGAGAGAGAGGGAGAGAGAGGGAUGGAACAGAGCCUGUGAGACACAGAGACAACAGCUGCCAGAAAG 217
                     34334444455667778889************9999999988888899*************999999999999999999999999999**99999 PP

                     :::::::::::::::.......:::::::::::::::::::::::.........:::::::::::::::::::::::::::: CS
         RF01947 109 GGGUUUUUCuUGGGG.......CCcAGAgAGacguGAGCaGAGau.........GGAGGCCCcUCUCuCcCaGCCCCCagCa 174
                      GG UU UC  GGG        C   GA AG +g  AGCaGAG           G   GC Cc C CuC+C GCCC Ca Ca
  Transcript_157 218 CGGAUUCUCAGGGGAaggaggaCGUGGACAGUUGACAGCAGAGCCccgguucccGUCUGCUCCCCGCUCUCUGCCC-CACCA 298
                     9999998888776531111111444556666666667777776531111111112333444444455555556554.34444 PP

RNAfold
>Transcript_157
CCGAAGGAGAGCGAGGCUCUUGGUGGGUGCCAAAAAGUGAGAGAGAGGGA
GAGAGAGGGAUGGAACAGAGCCUGUGAGACACAGAGACAACAGCUGCCAG
AAAGCGGAUUCUCAGGGGAAGGAGGACGUGGACAGUUGACAGCAGAGCCC
CGGUUCCCGUCUGCUCCCCGCUCUCUGCCCCACCAUGUACUCGCC
..........(((((...(.(((((((.((.........((((((.(((.(((((((((((((........(((((...)))))......((((((((.....(((..((((........))))..))))).))))))...........)))..)))).))).)))))).))))))))))))))).)..))))). (-72.80)

Length sequence

: 195

Length match:

174