Transcript_161

cmscan-Rfam

Family :

mir-492

Id:

RF00989

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00989

Description:

not description

Score:

44.1

E-value:

2.6e-07

From sequence:

507

To sequence:

622

Alignments:

                               v          v               v vv vv    v    v      v     v    v    v vv vv v           NC
                     :::<<-<<<<<<---------<--<-<----<<-<<<<<<<<<<<---<<<<<<-<----<_____>-->->>>>>>>>>>>>>>>>>->>---- CS
         RF00989   1 aGACuACaGCcacUAcUucAAgACcAUcgAgGAccUgCgggAcaaGAUuCuugguGCCACcAUUgAgAACUccaaGauugUccuGcAgAUCGACA 95 
                     +GAC ACAGC  CUA+  C   A C U GA :A CUG G  A  AG U ::UG  :  AC  U GA AA:  CA:: U  U  U CAGAU:GACA
  Transcript_161 507 UGACUACAGCCGCUAUACCCCCAUCCUGGAUGAUCUGCGCAAGAAGGUAUUUGACAGAACAGUGGACAAUGCCAGGCUGGUGCUCCAGAUUGACA 601
                     *********************************************************************************************** PP

                          v    v           NC
                     >->-->--->>>>>>->>::: CS
         RF00989  96 AUgCCcGuCugGCuGCaGAUG 116
                     AUGCC GUC  GCUGC GAUG
  Transcript_161 602 AUGCCCGUCUAGCUGCGGAUG 622
                     ********************* PP

RNAfold
>Transcript_161
GACUACAGCCGCUAUACCCCCAUCCUGGAUGAUCUGCGCAAGAAGGUAUU
UGACAGAACAGUGGACAAUGCCAGGCUGGUGCUCCAGAUUGACAAUGCCC
GUCUAGCUGCGGAUG
.....((.((((.......(((.(((((...((((.(....).))))..((.((......)).)).....))))).))).(((..((((.(.......).))))))).)))).)) (-27.50)

Length sequence

: 115

Length match:

114