Transcript_169

cmscan-Rfam

Family :

DLEU1_2

Id:

RF02104

Type:

Gene; lncRNA;

Taxonomy:

Eukaryota;

Ontology:

Not found

Description:

not description

Score:

22.4

E-value:

0.00022

From sequence:

1349

To sequence:

1118

Alignments:

                      :::::::::::::::::::::::::::::::::::::..::::::::::::::::::::::::::::::::::.::::::::::::::::::: CS
         RF02104   23 CuUUUgCUaGcCaUUCUUUCCCUUUUUGCUcUcCAcA..caCcUCAgcUGGGAauCUUUaUaUGUGCAGUAUU.UUUuguUUGUgUuAuaCUG 112 
                      CuUUU  U G   UUCUUUCCCUU  U  U U C +   c+ + CA +U GG   CU Ua aUGUGCA  AU  U U++ UUG   +A  CUG
  Transcript_169 1349 CUUUUUUUUGUUUUUCUUUCCCUUGCUUGUGUACCUUuuCUUUGCAUUUUGGGUACUGUAGAUGUGCAUAAUGgUGUGUGUUG---CA-CCUG 1261
                      6778888899999*********987665555544443003445689999999999999*******999888443444443333...33.4566 PP

                      :::::::::.....::::::::::::::::::::::::..........::::::::::::::::::::::::::::::::::::::::::::: CS
         RF02104  113 GUaAUUAUA.....AaGuuauCUAGGAGGCUAGgAGaG..........CuGACCAaCaGaGaaGGGAAAGCAgUcugUUcUGAccauAGUGAC 190 
                      GU AU  U         uu+u UA G G  U   AGa           C GACCAa  GaGaa  G AA    Uc g UcUG   a    GA 
  Transcript_169 1260 GUUAUGUUUggaccUUUUUUUUUAUGUGAGUUACAGAAcaaguucauuCAGACCAAGGGAGAACUGGAAAAGCUCAGCUCUGCAGAGGCAGAA 1168
                      665543332110001122233334433333322222221111111122789999999988877555444445688999***999999999999 PP

                      :::::::::::::::::::::::::::::::::::::::::::::::::: CS
         RF02104  191 auAAGGAGUUCAauuacacCaaauAuCuUucaAgcAUgUUUCUCCCaUUU 240 
                      auAA GAGUU A+  a a+Ca a+A Cu       AUgUUU  CCCaUU 
  Transcript_169 1167 AUAAUGAGUUGAUGAAGAUCAGACAACUGGUUUUUAUGUUUUGCCCAUUA 1118
                      **************************999888899999999999988864 PP

RNAfold

>Transcript_169
GGUCCAUGUAGGGACUACUUUGAAUGUUGUGGGACAUUUGGGGCAAAAUA
AGUAGUAAUGGGCAAAACAUAAAAACCAGUUGUCUGAUCUUCAUCAACUC
AUUAUUUCUGCCUCUGCAGAGCUGAGCUUUUCCAGUUCUCCCUUGGUCUG
AAUGAACUUGUUCUGUAACUCACAUAAAAAAAAAGGUCCAAACAUAACCA
GGUGCAACACACACCAUUAUGCACAUCUACAGUACCCAAAAUGCAAAGAA
AAGGUACACAAGCAAGGGAAAGAAAAACAAAAAAAAGAAAACUACAAAAC
AAGUGGAGAACUGAUUAGUGGACCACCAGGUAGCAACAGUGAU
(((((((((((((....(((..((((((....))))))..))).......((.(((((((((..............(((....)))...........))))))))).))..)))))).((((...))))...(((((((((((((.((.....)).((((((..(((.....(((((.......(((.........))).((((.......)))).)))))......))).(((((................)))))...)))))).................................)))).)))))))))....)))))))................... (-73.40)

Length sequence

: 343

Length match:

230