Transcript_174

cmscan-Rfam

Family :

mir-1249

Id:

RF01918

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01918

Description:

not description

Score:

29.3

E-value:

1.8e-05

From sequence:

111

To sequence:

28

Alignments:

                                                                                                           NC
                     <<<-<<--<<.<<<<<<<<<-<<-<<-<<<<---<<<<<________>>>>>...>>>>->>->>>>>>>>>>>->>-->>->>> CS
         RF01918  12 GuugGCAUGG.GgaGgaGGGAGGAGaUGGGCCAaGuuCCCUCUGgCUGGaaC...GCCCUuCCCCCCCucCucCACCUgGCGaaC 92 
                     ::U GC  GG G:A:GAGGG :GA::UGG:: A ::::C  CUG   G::::   ::CC :: C:CCCUC:U:CACCUGGCGA::
  Transcript_174 111 ACUCGCCAGGuGAAUGAGGG-UGACUUGGCUGACUCCACUCCUGCUGGUGGAuacAGCCAAGUCACCCUCAUUCACCUGGCGAGU 28 
                     ********************.9*************************************************************** PP

RNAfold
>Transcript_174
UGGUGAGACUGGCUCCACGACUCGCCAGGUGAAUGAGGGUGACUUGGCUG
UAUCCACCAGCAGGAGUGGAGUCAGCCAAGUCACCCUCAUUCACCUGGCG
AGUCG
....(((.....)))..(((((((((((((((((((((((((((((((((..(((((........)))))..))))))))))))))))))))))))))))))))) (-80.10)

Length sequence

: 105

Length match:

82